SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18735

Length: 165 nt

UniGene Fasta

>biog3_v1.0_unigene18735
TACCATTTACCATGGAGACACCCGTTTGGGAGAGGTGAACATCTGCCCTCAGTACGAGGATTCAAACTTGTTGAATGCAGTTAGGGAGGTGATTAAGATATCTCACTTGTCACCCCCAAGTGAAAGATGCCCTCCTCTGGCAGTGCTCCACACGATTACGTCCAG

Ace file of the UniGene biog3_v1.0_unigene18735

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4600	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	rna polymerase ii c-terminal domain phosphatase-like 1-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoserine phosphatase.	EC:3.1.3.3	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	74%
Blast2go	Methane metabolism	00680	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	74%
Blast2go	dephosphorylation	GO:0016311	Biological Process	74%
Blast2go	response to wounding	GO:0009611	Biological Process	74%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	74%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	74%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	nucleotide phosphatase activity	GO:0019204	Molecular Function	74%
Blast2go	phosphoserine phosphatase activity	GO:0004647	Molecular Function	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q5YDB5

Fln msg: Distance to subject end: 709 aas, atg_distance in limit (1-15): atg_distance = 9, W2: There is no M at the beginning, your sequence is shorter than subject: 54 - 771

Fln protein: TIYHGDTRLGEVNICPQYEDSNLLNAVREVIKISHLSPPSERCPPLAVLHTITS

Protein Length: 55

Fln nts: TACCATTTACCATGGAGACACCCGTTTGGGAGAGGTGAACATCTGCCCTCAGTACGAGGATTCAAACTTGTTGAATGCAGTTAGGGAGGTGATTAAGATATCTCACTTGTCACCCCCAAGTGAAAGATGCCCTCCTCTGGCAGTGCTCCACACGATTACGTCCAG

Fln Alignment:

biogeco3_mira_c15808___IYHGDTRLGEVNICPQYEDSNLLNAVREVIKISHLSPPSERCPPLAVLHTITS
Q5YDB5__________________VYHGDLRLGELDV-NHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain