SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18637

Length: 213 nt

UniGene Fasta

>biog3_v1.0_unigene18637
AATGTCAATATGTTGTATCAGAGTGTTGGCATGGTCGTTGAGGGAAGCAGACTAGTCCAAGTGGATGTTGTTGTTCTTGATGAAGTTCATTATTTAAGTGACATCTCTCGAGGAACTGTTTGGGAGGAGACAGTTATTTACTGTCCAAAGGAAGTGCAACTTATTTGTCTTTCTGCGACAGTTGCAAATCCTGAAGAACTAGCAGGATGGATT

Ace file of the UniGene biog3_v1.0_unigene18637

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41617	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] sp\|B9DFG3.2\|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2	-	-	8.40779e-45	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	dead-box atp-dependent rna helicase chloroplastic-like	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	82%
Blast2go	Thiamine metabolism	00730	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	plasmodesmata-mediated intercellular transport	GO:0010497	Biological Process	82%
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	82%
Blast2go	cytoplasmic stress granule	GO:0010494	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: Distance to subject end: 764 aas, your sequence is shorter than subject: 71 - 884

Fln protein: NVNMLYQSVGMVVEGSRLVQVDVVVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPEELAGWI

Protein Length: 72

Fln nts: AATGTCAATATGTTGTATCAGAGTGTTGGCATGGTCGTTGAGGGAAGCAGACTAGTCCAAGTGGATGTTGTTGTTCTTGATGAAGTTCATTATTTAAGTGACATCTCTCGAGGAACTGTTTGGGAGGAGACAGTTATTTACTGTCCAAAGGAAGTGCAACTTATTTGTCTTTCTGCGACAGTTGCAAATCCTGAAGAACTAGCAGGATGGATT

Fln Alignment:

biogeco3_mira_c15680___HYLSDISRGTVWEETVIYCPKEVQLICLSATVANPEELAGWI
B8LMT3__________________HYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain