SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18594

Length: 216 nt

UniGene Fasta

>biog3_v1.0_unigene18594
AATGTAACGAGCGAAAGACCTTTTGGCATTTGTAGTAATGTAGGAAGTGTCAATGACCTACATAAAGATGTGACAATGATGTTCAAATACAAGTAATCAATTTGATCAAGTTGAAGATATTGATTTAATTACAACCAATGGACTTCATTCTATTGATTTCAGTCAGGGAAGTGCCGATGATTTACATAAAAGATGCAATGATGATGTTCAAAATAC

Ace file of the UniGene biog3_v1.0_unigene18594

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28373	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative tRNA isopentenylpyrophosphatase [Ipomoea trifida]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	trna isopentenyltransferase	-	-	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA dimethylallyltransferase.	EC:2.5.1.75	-	0.0	58%

Source	KEGGs	Term	Type	Identity
Blast2go	Zeatin biosynthesis	00908		58%
Blast2go	Biosynthesis of plant hormones	01070		58%
Blast2go	Metabolic pathways	01100		58%
Blast2go	Biosynthesis of secondary metabolites	01110		58%
Blast2go	Adenylate dimethylallyltransferase.	EC:2.5.1.27	-	58%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Zeatin biosynthesis	00908		0.0	58%
Blast2go	Biosynthesis of plant hormones	01070		0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin biosynthetic process	GO:0009691	Biological Process	58%
Blast2go	AMP dimethylallyltransferase activity	GO:0009824	Molecular Function	58%
Blast2go	cytosol	GO:0005829	Cellular Component	58%
Blast2go	tRNA dimethylallyltransferase activity	GO:0052381	Biological Process	58%

Source	InterPros	Term	Type	Identity
Sma3	tRNA isopentenyltransferase	IPR002627	-	-
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	tRNA delta(2)-isopentenylpyrophosphate transferase	IPR018022	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNK3

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 310 aas, your sequence is shorter than subject: 72 - 462

Fln protein: NVTSERPFGICSNVGSVNDLHxxCDNDxxxTSNQFDQVEDIDLITTNGLHSIDFSQGSADDLHKRCNDDVQN

Protein Length: 73

Fln nts: AATGTAACGAGCGAAAGACCTTTTGGCATTTGTAGTAATGTAGGAAGTGTCAATGACCTACATxxxxxxTGTGACAATGATGTxxxxxxTACAAGTAATCAATTTGATCAAGTTGAAGATATTGATTTAATTACAACCAATGGACTTCATTCTATTGATTTCAGTCAGGGAAGTGCCGATGATTTACATAAAAGATGCAATGATGATGTTCAAAATAC

Fln Alignment:

biogeco3_mira_c15625___TSERPFGICSNVGSVNDLHKRCDNDVQNTSNQFDQVEDIDLITTNGLHSIDFSQGSADDLHKRCNDDVQN
B8LNK3__________________TSKRPFSICSNAGNVNDLHKRCDNDVQNISNQFDEVEEIDPIPTNGFCPNDFIRGSANDLHKKCDDDVRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain