SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18583

Length: 286 nt

UniGene Fasta

>biog3_v1.0_unigene18583
AATGTCTGCCAATCAATTGAGTGGTCTGGTTCCAGCTATGCTCGGAAATTGCATAGCACTACAGTCATTGAATTTATCTAGAAATGTCTTCCAAGGTTCTATTCCAGATTCACTTGGAAATTTACAAAATCTCATCATCCTAGATCTCTCTTTGAACTCATTATCAGGTACAATCCCTGTTGCCCTCCAGAAGCTAAAAATGCTCCATTATTTAAATTTGTCTTTCAACAATCTCACAGGGGAAATATCAGAAGAAGAATTTTACACAAATCAAACCATTATCATA

Ace file of the UniGene biog3_v1.0_unigene18583

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37098	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group]	-	-	3.0e-18	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	1.87302e-22	58%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 95 - 818

Fln protein: MSANQLSGLVPAMLGNCIALQSLNLSRNVFQGSIPDSLGNLQNLIILDLSLNSLSGTIPVALQKLKMLHYLNLSFNNLTGEISEEEFYTNQTIII

Protein Length: 96

Fln nts: AATGTCTGCCAATCAATTGAGTGGTCTGGTTCCAGCTATGCTCGGAAATTGCATAGCACTACAGTCATTGAATTTATCTAGAAATGTCTTCCAAGGTTCTATTCCAGATTCACTTGGAAATTTACAAAATCTCATCATCCTAGATCTCTCTTTGAACTCATTATCAGGTACAATCCCTGTTGCCCTCCAGAAGCTAAAAATGCTCCATTATTTAAATTTGTCTTTCAACAATCTCACAGGGGAAATATCAGAAGAAGAATTTTACACAAATCAAACCATTATCATA

Fln Alignment:

biogeco3_mira_c15609___MSANQLSGLVPAMLGNCIALQSLNLSRNVFQGSIPDSLGXXXXXXXXXXXXXXXXGTIPVALQKLKMLHYLNLSFNNLTGEI
B8LQX6__________________LSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain