SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18558

Length: 147 nt

UniGene Fasta

>biog3_v1.0_unigene18558
AATGTATTTAGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGACATT

Ace file of the UniGene biog3_v1.0_unigene18558

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16194	1/2
SustainPine v2.0	sp_v2.0_unigene23347	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	o-succinylhomoserine sulfhydrylase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methionine gamma-lyase.	EC:4.4.1.11	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	85%
Blast2go	Selenocompound metabolism	00450		0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	methionine gamma-lyase activity	GO:0018826	Molecular Function	0.0	85%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 88 and 88, Distance to subject end: 297 aas, your sequence is shorter than subject: 49 - 438

Fln protein: MYLGRQMAALEGTEAAYCTSSGMSAISSxxLQLCSHGDHVVASRCLYDI

Protein Length: 50

Fln nts: AATGTATTTAGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTxxxxxxTTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGACATT

Fln Alignment:

biogeco3_mira_c15575___LGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLY
A9P2J0__________________LGRQMAALEGTEAAYCTSSGMSAISSVLSQLCNHGDHVVASRCLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain