SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18519

Length: 252 nt

UniGene Fasta

>biog3_v1.0_unigene18519
AATGTCATATTATTCACCAGATCTCCTTGGCCGGATCCACCAGATCAATCAGGCTGGCCCGTATCTCGGTCTTGTAATCCCTAACAAATTCGAAATGGACCCGCTACTCCATTCTCCTGTTTTCATGGCCGACGAGGACAGCCCCTATATCGACATCTCTGGTCGGAGGTTTCGCATCGGAACAGTGATGCATTACAGAGTAATTGCGGTGATGACAGGACTGGGTATGGTCAACGCAGGAGTGACTACCCA

Ace file of the UniGene biog3_v1.0_unigene18519

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28173	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase-like protein protein [Arabidopsis thaliana] gb\|AEE85565.1\| Phosphorylase-like protein protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	bark storage protein a-like	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Nucleoside phosphorylase	IPR018017	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 83 - 346

Fln protein: MSYYSPDLLGRIHQINQAGPYLGLVIPNKFEMDPLLHSPVFMADEDSPYIDISGRRFRIGTVMHYRVIAVMTGLGMVNAGVTT

Protein Length: 84

Fln nts: AATGTCATATTATTCACCAGATCTCCTTGGCCGGATCCACCAGATCAATCAGGCTGGCCCGTATCTCGGTCTTGTAATCCCTAACAAATTCGAAATGGACCCGCTACTCCATTCTCCTGTTTTCATGGCCGACGAGGACAGCCCCTATATCGACATCTCTGGTCGGAGGTTTCGCATCGGAACAGTGATGCATTACAGAGTAATTGCGGTGATGACAGGACTGGGTATGGTCAACGCAGGAGTGACTACCCA

Fln Alignment:

biogeco3_mira_c15527___IHQINQAGPYLGLVIPNKFEMDPLLHSPVFMADEDSPYIDISGRRFRIGTVMHYRVIAVMTGLGMVNAGVTT
B8LL97__________________IRKINRHGPYLGIVVPNAFEMDPLLQSSSFNV---SKTLDVAGRRFHIGSIHKHRVIIVMSGLGMLNSGITT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain