SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18516

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene18516
TTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATACAGAGAGTTGAATATGTCCAAGAGACCGGAGAAAAGAAGCCATCTAATGGATCTACATT

Ace file of the UniGene biog3_v1.0_unigene18516 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1917	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, your sequence is shorter than subject: 65 - 593

Fln protein: SMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYNYIF*

Protein Length: 66

Fln nts: TTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATACAGAGAGTTGAATATGTCCAAGAGACCGGAGAAAAGAAGCCATCTAATGGATCTACATT

Fln Alignment:

biogeco3_mira_c15523___VKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYN
C0PQ26__________________VTYLVLDEADRMLDMGFEPQIRKIITQI----RPDRQTLYWSATWPREVENLARQFLHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain