SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18504

Length: 218 nt

UniGene Fasta

>biog3_v1.0_unigene18504
AATGTCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTAC

Ace file of the UniGene biog3_v1.0_unigene18504

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2811	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2C n=1 Tax=Zea mays RepID=B6U2F2_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein phosphatase 2c containing expressed	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	75%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR010822	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACC8

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 72 - 238

Fln protein: MSMTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATL

Protein Length: 73

Fln nts: AATGTCAATGACACATGGATTTAATTTTCCTTACCAGATTGAGAGAGGAGATGATCCATCATTGCTATTGGAGAGCTATGACATTGCCCTGGATGATGGAGATGTAATTGTTACAGCTACAGATGGCCTTTTTGATAACTTATATGACCACGAGATAGCTTCTATTATACACAATTCTTTGCAATCAGGTTTGGGACCTAAGGAAATGGCGACTTTAC

Fln Alignment:

biogeco3_mira_c15509___MTHGFNFPYQIERGDDPSLLLESYDIALDDGDVIVTATDGLFDNLYDHEIASIIHNSLQSGLGPKEMATL
D5ACC8__________________MTHGFNFPYQIERGDDPSLLLESYDITLNDGDVIVTATDGLFDNLYDHEIASIIQNSLQSGLGPKEMATL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain