SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18447

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene18447
TTTCCGGTAATCAATCATCCAAGTAGTCTAAAGGATCAGAAATATAATAACACTCCAACCCCATCTTCGTCCAAATCGCATGTCCCTGCTCCAGCCTGGACCTCCAATAAGCCCTCATGGACTCCTCAACCCTCACCTTCACATGCTCCTAGGCCTGCACAAACTGGGTTTGGATGGACTGGCCAATCTGGGCAATCATCGGGTGTGTGGTCTGCCCATGGCCAGTCCCAACCTA

Ace file of the UniGene biog3_v1.0_unigene18447

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene711	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTA1_RICCO	-	-	37%
FL-Next	tr=Chaperone binding protein, putative; Ricinus communis (Castor bean).	-	-	42%
Blast2go	tetratricopeptide repeat domain-containing protein	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	55%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RTA1

Fln msg: Distance to subject end: 402 aas, your sequence is shorter than subject: 78 - 508

Fln protein: FPVINHPSSLKDQKYNNTPTPSSSKSHVPAPAWTSNKPSWTPQPSPSHAPRPAQTGFGWTGQSGQSSGVWSAHGQSQP

Protein Length: 79

Fln nts: TTTCCGGTAATCAATCATCCAAGTAGTCTAAAGGATCAGAAATATAATAACACTCCAACCCCATCTTCGTCCAAATCGCATGTCCCTGCTCCAGCCTGGACCTCCAATAAGCCCTCATGGACTCCTCAACCCTCACCTTCACATGCTCCTAGGCCTGCACAAACTGGGTTTGGATGGACTGGCCAATCTGGGCAATCATCGGGTGTGTGGTCTGCCCATGGCCAGTCCCAACCTA

Fln Alignment:

biogeco3_mira_c15431___NHPSSLKDQKYNNTPTPSSSKSHVPA---PAWTSNKPSWTPQPSPSHAPRPAQTG-----FGWTGQSGQSSGVWSAHG
B9RTA1__________________NRSKSLNDQKNQTSSSYSSYSSSTTTQSKPAWQSNKPSWTHQPAPSQSTRPGLNGPSSMVGDISGKSWNSMGVGSGSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain