SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18425

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene18425
AGCAGTGGTGCTTGAATCGTTTGGTGTTTATGGGGAAGGAGAGTTCAAGTGGTATTATGGGTACCCTTACCTAGCAGTTGTGCTAAACTTTAGTCAATCATGGGCATTATATTGTCTAGTTCAATTTTATACAGTTACAAAGGACGTGTTGGAGCCAATCAAACCTTTGGCGAAGTTTCTTGTATTTAAGTCCATTGTATTTTTAACATGGTGGCAAGGTGTTGCGATAGCAGTTCTCTACTCTTTTACATT

Ace file of the UniGene biog3_v1.0_unigene18425 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene57191	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAMU_USDA_FP_5734 Vitis shuttleworthii L., grape Vitis shuttleworthii cDNA clone JLVs143_A09 5', mRNA sequence.	-	-	1.99965e-42	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	transmembrane protein 184c	-	-	1.63251e-42	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Organic solute transporter Ost-alpha	IPR005178	-	0.0	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNY2

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 83 - 295

Fln protein: AVVLESFGVYGEGEFKWYYGYPYLAVVLNFSQSWALYCLVQFYTVTKDVLEPIKPLAKFLVFKSIVFLTWWQGVAIAVLYSFT

Protein Length: 84

Fln nts: AGCAGTGGTGCTTGAATCGTTTGGTGTTTATGGGGAAGGAGAGTTCAAGTGGTATTATGGGTACCCTTACCTAGCAGTTGTGCTAAACTTTAGTCAATCATGGGCATTATATTGTCTAGTTCAATTTTATACAGTTACAAAGGACGTGTTGGAGCCAATCAAACCTTTGGCGAAGTTTCTTGTATTTAAGTCCATTGTATTTTTAACATGGTGGCAAGGTGTTGCGATAGCAGTTCTCTACTCTTTTACATT

Fln Alignment:

biogeco3_mira_c15401___VVLESFGVYGEGEFKWYYGYPYLAVVLNFSQSWALYCLVQFYTVTKDVLEPIKPLAKFLVFKSIVFLTWWQGVAIAVLYS
A9NNY2__________________IFFQLLGLY-TGWISWVF-----SIILNISVSLALYSLVLFYHVFAKELAPHKPLSKFLCVKGIVFFCFWQGIVLGILAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain