SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18335

Length: 222 nt

UniGene Fasta

>biog3_v1.0_unigene18335
AATGTAACTGGTTAGAAAGATTTCCTCAATATAAGTACAGGGACTTCTATATAGCCGGTGAGAGCTATGCAGGGCATTATGTTCCACAGTTGGCACAAGTAGTCTACAGAAACAACAAGGGCCTTCAAAAGTCAGTTATCAATTTCAAGGGTTTCATGGTTGGCAATGCAGTTACTGATGACTACCATGACTTCATAGGGACTTTTGAATATTGGTGACATT

Ace file of the UniGene biog3_v1.0_unigene18335

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6697	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	carboxypeptidase D [Arabidopsis thaliana] sp\|Q949Q7.1\|SCP29_ARATH RecName: Full=Serine carboxypeptidase-like 29; Flags: Precursor gb\|AAK93635.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM91708.1\| putative serine carboxypeptidase II	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine carboxypeptidase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	84%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKI4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 230 aas, your sequence is shorter than subject: 72 - 343

Fln protein: CNWLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKSVINFKGFMVGNAVTDDYHDFIGTFEYW*

Protein Length: 73

Fln nts: AATGTAACTGGTTAGAAAGATTTCCTCAATATAAGTACAGGGACTTCTATATAGCCGGTGAGAGCTATGCAGGGCATTATGTTCCACAGTTGGCACAAGTAGTCTACAGAAACAACAAGGGCCTTCAAAAGTCAGTTATCAATTTCAAGGGTTTCATGGTTGGCAATGCAGTTACTGATGACTACCATGACTTCATAGGGACTTTTGAATATTGGTGACATT

Fln Alignment:

biogeco3_mira_c15266___WLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKSVINFKGFMVGNAVTDDYHDFIGTFEYW
A9NKI4__________________WLERFPQYKYRDFYIAGESYAGHYVPQLAQVVYRNNKGLQKPIINFKGFMVGNAVTDDYHDFIGTFEYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain