SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18225

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene18225
TTTGTCACGACAAGGCCCCGAATTGTGGTGAAGGCAGAGCAAAGTGAAATGGGGGGTGAGTTCTGCGTAAAAGCAGAAGATAATGGAACAGGAGGAGCAAACGCTGTAATGGAGGTGAAGGGTAGTGAATCCGGGGAAAGCTCCGGTGATGGCAATGGAATAACAGGGGCAAGCTTCGCAGAAAAGGAACAAGAGGCCAGCAAGAGCAGGAAGCCTTCTCCTTTGGAGAGAGGGGGGACACTCTCAGGGGCCGAGGCTAAGGGACATT

Ace file of the UniGene biog3_v1.0_unigene18225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2286	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	EST1085419 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAEN71 3' end, mRNA sequence.	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	lhc-related protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM6

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 89 - 371

Fln protein: FVTTRPRIVVKAEQSEMGGEFCVKAEDNGTGGANAVMEVKGSESGESSGDGNGITGASFAEKEQEASKSRKPSPLERGGTLSGAEAKGH

Protein Length: 90

Fln nts: TTTGTCACGACAAGGCCCCGAATTGTGGTGAAGGCAGAGCAAAGTGAAATGGGGGGTGAGTTCTGCGTAAAAGCAGAAGATAATGGAACAGGAGGAGCAAACGCTGTAATGGAGGTGAAGGGTAGTGAATCCGGGGAAAGCTCCGGTGATGGCAATGGAATAACAGGGGCAAGCTTCGCAGAAAAGGAACAAGAGGCCAGCAAGAGCAGGAAGCCTTCTCCTTTGGAGAGAGGGGGGACACTCTCAGGGGCCGAGGCTAAGGGACATT

Fln Alignment:

biogeco3_mira_c15126___VVKAEQSEMGGEFCVKAEDNGTGGANAVMEVKXXXXXXXXXXGNGITGASFAEKEQEASKSRKPSPLERGGTLSGAEAKG
A9NXM6__________________VIEVKGSESGENS--KAEDNGTGVENAVIEVKGSESGENSVDGNGITGASSAEKVQEASKSRKSSPLERGGTLIGAEAKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain