SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18214

Length: 358 nt

UniGene Fasta

>biog3_v1.0_unigene18214
CGCAGATAGCTAGGAAGATCCAGAGATTAAGTGGTGCTAGTAATGTGAGACTAAAGAATGCTATTGACCCATCTTTGATTGCAGGTTTCATTATCAGCTATGAGAAAGATGGCAAGCACATGATAGACATGAGTGTGAAAAGCAAATTGGAGAAGTTAGCATTCAAATTGACTCTGCAGAAAAAATTGGAGTATGTAATATATGTTAAAGCATTCTGAATACAAGCAATCAAGTTCTTTGTAGGCAAAGATCTTCCTTTCTTCCAGTAGTGAGTAGTAATGCCTTGCAAGAATATCTTTGAAATGTTTGAGAAATGCTGGCCTCGGTCCTTCACTCCTCTCCACTGGGATCTTCTCTA

Ace file of the UniGene biog3_v1.0_unigene18214

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene554	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor gb\|AAA33647.1\| ATP synthase delta subunit [Pisum sativum]	-	-	5.0e-38	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	68%
Blast2go	proton transport	GO:0015992	Biological Process	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%
Blast2go	membrane	GO:0016020	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTG2

Fln msg: your sequence is shorter than subject: 72 - 256

Fln protein: QIARKIQRLSGASNVRLKNAIDPSLIAGFIISYEKDGKHMIDMSVKSKLEKLAFKLTLQKKLEYVIYVKAF*

Protein Length: 73

Fln nts: CGCAGATAGCTAGGAAGATCCAGAGATTAAGTGGTGCTAGTAATGTGAGACTAAAGAATGCTATTGACCCATCTTTGATTGCAGGTTTCATTATCAGCTATGAGAAAGATGGCAAGCACATGATAGACATGAGTGTGAAAAGCAAATTGGAGAAGTTAGCATTCAAATTGACTCTGCAGAAAAAATTGGAGTATGTAATATATGTTAAAGCATTCTGA___ATACAAGCAATCAAGTTCTTTGTAGGCAAAGATCTTCCTTTCTTCCAGTAGTGAGTAGTAATGCCTTGCAAGAATATCTTTGAAATGTTTGAGAAATGCTGGCCTCGGTCCTTCACTCCTCTCCACTGGGATCTTCTCTA

Fln Alignment:

biogeco3_mira_c15111___QIARKIQRLSGASNVRLKNAIDPSLIAGFIISYEKDGKHMIDMSVKSKLEKLAFKLTLQKKLEYV
A9NTG2__________________EIAKKVQSLTGAKNVRLKTVIDPSLIAGFTIRYGPTGSNIIDMSVKTELEKLASQIGYKERIENV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain