SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18021

Length: 186 nt

UniGene Fasta

>biog3_v1.0_unigene18021
AATGTAGACAGATGCATTGTTAGCAATGGAAATTTTTGAAGTTGCATATCGGCAGCCCGGTTTCAAGCACAGTTATTCTACTTATCATACCCTTATATGCAAACTGGGGCGCGCGAGGCAGTTTAAAGCAATGGAAGGTCTAATCCAGCAGATGAGAAAGGATGGCTGTCCATACACACCAGGTTT

Ace file of the UniGene biog3_v1.0_unigene18021

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36808	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001984DF5	-	-	4.0e-24	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 316 aas, your sequence is shorter than subject: 61 - 486

Fln protein: M*TDALLAMEIFEVAYRQPGFKHSYSTYHTLICKLGRARQFKAMEGLIQQMRKDGCPYTPG

Protein Length: 62

Fln nts: AATGTAGACAGATGCATTGTTAGCAATGGAAATTTTTGAAGTTGCATATCGGCAGCCCGGTTTCAAGCACAGTTATTCTACTTATCATACCCTTATATGCAAACTGGGGCGCGCGAGGCAGTTTAAAGCAATGGAAGGTCTAATCCAGCAGATGAGAAAGGATGGCTGTCCATACACACCAGGTTT

Fln Alignment:

biogeco3_mira_c14839___TDALLAMEIFEVAYRQPGFKHSYSTYHTLICKLGRARQFKAMEGLIQQMRKDGCPYTPG
D5AAH0__________________TDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain