SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17996

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene17996
GAAGCAGTGAAGGTCGTGCCGTAGAGCGCAATTTTGCAGAGAGAAGCGCGAAGAAAATACACGATTGGAGCAGGCACATATTCGATTTTCAGAGATGGCAAATGAGGTTGTTATTCTCAAGCTTCCGGTGCAAGACCCTCCAGGCAAAGAGTTCTCTTCGTCTCATCTTACTTGGTACAAGTTTGAAGGACACAATCATACGGTTGACGAGATTGCTCTTATACCTTATGCTAGAGTTGAAGAT

Ace file of the UniGene biog3_v1.0_unigene17996

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene44777	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding protein [Arabidopsis thaliana] gb\|AEE83354.1\| zinc ion binding protein [Arabidopsis thaliana]	-	-	1.0e-05	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Blast2go	zinc ion binding protein	-	-	2.66162e-09	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SUK0

Fln msg: Distance to subject end: 640 aas, your sequence is shorter than subject: 50 - 697

Fln protein: MANEVVILKLPVQDPPGKEFSSSHLTWYKFEGHNHTVDEIALIPYARVED

Protein Length: 51

Fln nts: GAAGCAGTGAAGGTCGTGCCGTAGAGCGCAATTTTGCAGAGAGAAGCGCGAAGAAAATACACGATTGGAGCAGGCACATATTCGATTTTCAGAG_-_ATGGCAAATGAGGTTGTTATTCTCAAGCTTCCGGTGCAAGACCCTCCAGGCAAAGAGTTCTCTTCGTCTCATCTTACTTGGTACAAGTTTGAAGGACACAATCATACGGTTGACGAGATTGCTCTTATACCTTATGCTAGAGTTGAAGAT

Fln Alignment:

biogeco3_mira_c14801___SEMANEVVILKLPVQDPPGKEFSSSHLTWYKFEGHNHTVDEIALIPYARVED
D7SUK0__________________SKMPRMEDILNLPVQDPPCAEFSAAHINWKKVEGGRQGGDDIALIPFSRVDD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain