SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17990

Length: 230 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17990
CGTCCATACGGGAAATCCAGTACTTTTGGCTTTGGTGCGTCTGGAAGAATCGAGCATGAGAAATCGGGTTGTTATGGACGAGGATATGGGGGCTTTAGCAGGAATGACGTGGATGCAACCGCCTCGGAAGATTCCTGTACGCCAAAGAGGAAGTCAATCAGCTTGATGGACAGAAATGACGGTTTTAATGTGCCTATTCAGGTTTATGCAGTGTCTGTTATACACGGATC

Ace file of the UniGene biog3_v1.0_unigene17990 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1218	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	47%
Blast2go	nuclear protein x1	-	-	53%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	53%
Blast2go	protein binding	GO:0005515	Molecular Function	53%
Blast2go	nucleus	GO:0005634	Cellular Component	53%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Methyl-CpG DNA binding	IPR001739	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3		IPR009255	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6GSS8

Fln msg: Distance to subject end: 673 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 76 - 755

Fln protein: RPYGKSSTFGFGASGRIEHEKSGCYGRGYGGFSRNDVDATASEDSCTPKRKSISLMDRNDGFNVPIQVYAVSVIHG

Protein Length: 77

Fln nts: CGTCCATACGGGAAATCCAGTACTTTTGGCTTTGGTGCGTCTGGAAGAATCGAGCATGAGAAATCGGGTTGTTATGGACGAGGATATGGGGGCTTTAGCAGGAATGACGTGGATGCAACCGCCTCGGAAGATTCCTGTACGCCAAAGAGGAAGTCAATCAGCTTGATGGACAGAAATGACGGTTTTAATGTGCCTATTCAGGTTTATGCAGTGTCTGTTATACACGGATC

Fln Alignment:

biogeco3_mira_c14793___STFGFGASGRIEHEKSGCYGRGYGGFSRNDVDATASEDSCTPKRKSISL-MDRNDGFNVPIQVYAVS
F6GSS8__________________SSSGFVPDYRHAVETMG-ESEGFGSSGRVDTEMTASEDSCVPKRKCISLNVDGYDSFCVPVQVLSLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
159	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain