SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17980

Length: 283 nt

UniGene Fasta

>biog3_v1.0_unigene17980
TAAGACATTGGAATTCAAAGGAATGTAGGGCTTCTGAGCTCACGTCAACACTACGATTCCCGTTGGTGCTTCCATTCTGCACAGAGATCTTCCGAAACAATTTCTTCAATCCGGTATTCATCCGTAGGATCGGCCGGGGATCGAAACCCCTTCACCACCATTTCAACCGGTTTCAAGTTCGAGCCCTCTCAACTTCCGTCGAACAAACACCTGAATCGACCACTCCTGCTCTGGCTGCCCTGCGAGAGCGGCTGGCCAATGGCGGTCCAACTCTATCGGATTT

Ace file of the UniGene biog3_v1.0_unigene17980

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3409	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoyl synthase, mitochondrial n=1 Tax=Picea sitchensis RepID=LIAS_PICSI	-	-	91%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	lipoic acid synthase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	85%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	85%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	85%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	85%
Blast2go	glycine catabolic process	GO:0006546	Biological Process	85%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	85%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	85%
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	85%
Blast2go	GTPase activity	GO:0003924	Molecular Function	85%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	85%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	85%
Blast2go	extracellular space	GO:0005615	Cellular Component	85%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Radical SAM	IPR007197	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNH7

Fln msg: Distance to subject end: 324 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 93 - 386

Fln protein: RHWNSKECRASELTSTLRFPLVLPFCTEIFRNNFFNPVFIRRIGRGSKPLHHHFNRFQVRALSTSVEQTPESTTPALAALRERLANGGPTLSD

Protein Length: 94

Fln nts: TAAGACATTGGAATTCAAAGGAATGTAGGGCTTCTGAGCTCACGTCAACACTACGATTCCCGTTGGTGCTTCCATTCTGCACAGAGATCTTCCGAAACAATTTCTTCAATCCGGTATTCATCCGTAGGATCGGCCGGGGATCGAAACCCCTTCACCACCATTTCAACCGGTTTCAAGTTCGAGCCCTCTCAACTTCCGTCGAACAAACACCTGAATCGACCACTCCTGCTCTGGCTGCCCTGCGAGAGCGGCTGGCCAATGGCGGTCCAACTCTATCGGATTT

Fln Alignment:

biogeco3_mira_c14777___NPVFIRRIGRGSKPLHHHFNRFQVRALSTSVEQTPESTTPALAALRERLANGGPTLSD
A9NNH7__________________NPAFLRRITWGSKSLHHQFTRCQVRALSSSVEQTPESTTPALSALRERLANGGPTLSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain