SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17966

Length: 215 nt

UniGene Fasta

>biog3_v1.0_unigene17966
AATGTTCTACTTATTTCTATGGGAAGCAAATTGCAAGAGCTGCAAGATTTGCATTGATAGCCGAAGAAGCTCATTACCAAGAACTCATTCCTTGTGTTCGAGAATTTCTGGAGGAATCCATAACTCCGTGGCTTGATGGGAGCTTTGAAGGGAATGCACTACTTTATGATAACAAGTGGGTGGATTGATCAGCAGAAATGGTGCTCAGGATTCAG

Ace file of the UniGene biog3_v1.0_unigene17966

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene709	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucan-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCT5_CUCME	-	-	59%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	67%
Blast2go	beta-glucan-binding protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Endo-1,3(4)-beta-glucanase.	EC:3.2.1.6	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	77%
Blast2go	endo-1,3(4)-beta-glucanase activity	GO:0033903	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Glycoside hydrolase, family 81	IPR005200	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2D546

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 278 aas, your sequence is shorter than subject: 62 - 691

Fln protein: CSTYFYGKQIARAARFALIAEEAHYQELIPCVREFLEESITPWLDGSFEGNALLYDNKWVD*

Protein Length: 63

Fln nts: AATGTTCTACTTATTTCTATGGGAAGCAAATTGCAAGAGCTGCAAGATTTGCATTGATAGCCGAAGAAGCTCATTACCAAGAACTCATTCCTTGTGTTCGAGAATTTCTGGAGGAATCCATAACTCCGTGGCTTGATGGGAGCTTTGAAGGGAATGCACTACTTTATGATAACAAGTGGGTGGATTGATCAGCAGAAATGGTGCTCAGGATTCAG

Fln Alignment:

biogeco3_mira_c14755___STYFYGKQIARAARFALIAEEAHYQELIPCVREFLEESITPWLDGSFEGNALLYDNKW
F2D546__________________SSYFYGKAIARAARLALIAEEVGCPEVIPAVHRFLKATVTPWLDGSFQGNGFLYDPKW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain