SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17914

Length: 390 nt

UniGene Fasta

>biog3_v1.0_unigene17914
AATGTAGCTTTTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACGAGTCACTTCTATAGTTAATGGCTTATGTTTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCATTTGAACCTGCGGTCAATACATTGAG

Ace file of the UniGene biog3_v1.0_unigene17914

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28689	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PI-PLC X domain-containing protein [Arabidopsis thaliana] sp\|Q93XX5.1\|Y5713_ARATH RecName: Full=PI-PLC X domain-containing protein At5g67130; Flags: Precursor gb\|AAK96865.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM10115.1\| unknown protein [Arabidopsi	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	pi-plc x domain-containing protein at5g67130-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3		IPR004141	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAN6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 237 aas, your sequence is shorter than subject: 129 - 389

Fln protein: M*LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATRVTSIVNGLCFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTAFEPAVNTL

Protein Length: 130

Fln nts: AATGTAGCTTTTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACGAGTCACTTCTATAGTTAATGGCTTATGTTTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCATTTGAACCTGCGGTCAATACATTGAG

Fln Alignment:

biogeco3_mira_c14682___LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATRVTSIVNGLCFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTAFEPAVNTL
D5AAN6__________________LLDSCYTEGDCGSGLYCSTCQAVGQNQPVCVRGQATIVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDSVTNQLNNGVRGLMLDMYDFMGDVWLCHSLQGQCYNFTAFEPAINTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain