SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17863

Length: 1689 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene17863 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23081	11/275
SustainPine v2.0	sp_v2.0_unigene25873	5/275
SustainPine v2.0	sp_v2.0_unigene60306	257/275

Source	Descriptions	Term	Type	Identity
AutoFact	Adenosylhomocysteinase n=6 Tax=Tracheophyta RepID=A9NUB8_PICSI	-	-	92%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	s-adenosyl-l-homocysteine hydrolase	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	0.0	-
Sma3	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL7

Fln msg:

Fln protein: MALLAEKTVSGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTIEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAHLTKLSPEQAAYINVPVEGPYKPAHYRY*

Protein Length: 487

Fln nts: ACTCGCATTCTCCGTTGGAGCAAATCGTCCTAATCTCGGTCCCCGCAATCCGTGGTTTTGTCAGTTCTGCGTTTCTTTTCTCCGCAGCA_-_ATGGCGCTTCTGGCCGAGAAAACTGTGTCCGGACGGGAATTCAAGGTGAAGGATCTGTCCCAGGCGGATTTTGGGAGGTTGGAAATTGAATTGGCCGAAGTTGAGATGCCTGGATTGATGGCCTGCAGAGCTGAGTTCGGCCCCGCTCAGCCCTTTAAGGGTGCCCGGATCACTGGGTCCCTTCACATGACCATCCAGACCGCGGTGCTCATTGAGACCCTCACAGCTCTGGGTGCTGAGGTGAGATGGTGCTCCTGCAACATTTTCTCCACGCAGGACCACGCCGCCGCGGCTATTGCCCGCGACAGCGCTGCGGTGTTCGCTTGGAAGGGGGAGACGCTGCAGGAGTACTGGTGGTGTACTGAAAGGGCTCTTGACTGGGGTCCAGGCGGTGGCCCTGATCTGATTGTTGATGACGGTGGTGATGCAACTTTGTTGATCCATGAGGGGGTCAAGGCCGAGGAGGAGTTTGCCAAGACCGGGAAGGTGCCAGATCCGGCGTCTACTACGAATCTGGAGTTTCAGATGGTTTTGGGATTGATCAAGGACAGCATCAAGGTGGATCCCTTGAGGTACCATAAGATGAAGGATAGATTGGTTGGTGTTTCTGAAGAGACAACTACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGGACATTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACCAAGAGCAAGTTTGATAACTTATATGGATGTAGACACTCTCTCCCAGATGGTCTGATGAGAGCCACAGATGTCATGATAGCTGGTAAGGTTGCTGTTGTGTGTGGATATGGAGATGTTGGAAAGGGTTGTGCTGCAGCTCTAAAGGTTGCTGGAGCTAGAGTCATTGTTACAGAAATTGATCCAATCTGTGCCCTGCAAGCTCTTATGGAAGGTCTCCCTGTCCTTACTATAGAGGATGTAGTTAGTACTGCTGATATTTTTGTGACCACCACTGGCAACAAGGATATCATCATGGTTGACCACATGAGGAAAATGAAAAATAATGCCATTGTTTGCAACATTGGTCATTTTGACAACGAGATTGACATGCAAGGTCTTGAAACTTTCCCTGGTGTCAAGAAGATTACCATCAAGCCTCAGACGGATAGGTGGGTGTTCCCTGATACCAACAGTGGAATCATCGTTCTTGCAGAGGGACGTCTGATGAACTTGGGTTGTGCTACTGGCCACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTTATTGCTCAGTTGGAGCTCTGGAACGAGAAGAAGTCAGGGAAGTACGAGAAGAAGGTCTATGTGTTGCCTAAGCATCTAGACGAAAAGGTGGCTGCTCTGCATTTGCCTAAGTTGGGTGCTCATCTAACAAAGCTTTCTCCTGAACAGGCAGCGTATATCAACGTGCCCGTTGAGGGACCTTACAAGCCTGCCCACTACCGATACTGA___AGAGAAATGGCATTTTTGGTGACTTGCTGGGCAAGTGGCAAGGCTCCTGGACAGTTGCCAGAAGGACGAATCCCCCTCCGTGGCCGGCTCCATTGTTTTGTTCCAATTTTAATAAAAAAATGCTGTAGTCATGTATGACATT

Fln Alignment:

biogeco3_mira_c14606___EKTVSGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTIEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAHLTKLSPEQAAYINVPVEGPYKPAHYRY
B8LLL7__________________EKTVSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLAALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPESTTNLEFQMVLGLIKESMKVDPLRYHRMKERLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMLDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKSGKYEKKVYVLPKHLDEKVAALHLPKLGARLTKLSPDQAEYINVPVEGPYKPAHYRY

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1594	11		88		0.923776
1603	10	90			0.90298
1604	20		80		0.999996
1605			80	20	0.999996
1607		88		11	0.923564
1619	22			77	0.999999
1620		22	77		0.999999
1621	22	77			0.999999
1623			77	22	0.999999
1650	85	14			0.993533
1652	85			14	0.993533
1653		71		14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain