SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17858

Length: 283 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17858
AATGTATTGAGTATGGTCTTGAGGAGAATGCAGAATTGCTGGTTGCTTCCTGCCTACAGTTTTTTCTCAGGGATCTTCCAAGGTCTTTACACCATCCACAGGTTGCAAGCTTATTATGTAAACCGGAAGGCAGGAAAAGACTGGCAATGATTGGGCATTCATCGTTTGCTTTGTACTCCTTTTTAAGTCAAGTAGCCATGGAGGATGACATGAAGTCAGACACCACAGTGCAGCTTTTAGAAAGATTGAGAGAATGTGCCACTTCTCATAGGCAGAAAGCACT

Ace file of the UniGene biog3_v1.0_unigene17858 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2910	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-overproduction protein 1 n=5 Tax=Brassicaceae RepID=ETO1_ARATH	-	-	0.0	60%
FL-Next	sp=Ethylene-overproduction protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR013089	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O65020

Fln msg: Distance to subject end: 507 aas, your sequence is shorter than subject: 93 - 951

Fln protein: CIEYGLEENAELLVASCLQFFLRDLPRSLHHPQVASLLCKPEGRKRLAMIGHSSFALYSFLSQVAMEDDMKSDTTVQLLERLRECATSHRQKA

Protein Length: 94

Fln nts: AATGTATTGAGTATGGTCTTGAGGAGAATGCAGAATTGCTGGTTGCTTCCTGCCTACAGTTTTTTCTCAGGGATCTTCCAAGGTCTTTACACCATCCACAGGTTGCAAGCTTATTATGTAAACCGGAAGGCAGGAAAAGACTGGCAATGATTGGGCATTCATCGTTTGCTTTGTACTCCTTTTTAAGTCAAGTAGCCATGGAGGATGACATGAAGTCAGACACCACAGTGCAGCTTTTAGAAAGATTGAGAGAATGTGCCACTTCTCATAGGCAGAAAGCACT

Fln Alignment:

biogeco3_mira_c14601___IEYGLEENAELLVASCLQFFLRDLPRSLHHPQVASLLCKPEGRKRLAMIGHSSFALYSFLSQVAMEDDMKSDTTVQLLERLRECATSHRQK
O65020__________________IEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain