SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17855

Length: 466 nt

UniGene Fasta

>biog3_v1.0_unigene17855
AATGTATCCTCGAATACTCCCTTGAAAACCTCCTGGAAATTCATGTTTAGGATTTATTTGTGGAACCACTGTCACCAATTTTGAGAGGCTATAAAGTCAAGTTTGATTGATTTTCGTAGTTCTTTGTTGCATAATTTCCTGGTGTTGATCTCCACTGTTGAGGAGTTTTTCTTTCCGAAGAAAGCAGATTACAATTTATGCCTCCCAACAAGGATAGTCCGGTACAAGTACAAATGGCTGTTGCTGTTCTAGATGGTGCTGTTAATAGGCAATATCATGGCTTTAAGAAAATGGACCGAAAGCAATCAGGGAGGAGGCGTGTATTTGTTCAAACAGACACGGGCAGTGTTTTCAGCATTGAACTGGACCGAGAAGACAATGCGCACACTGTTAAAAGGAAGATGCAGATGGCCTTGAATGTACCCACTGAAGAAAATTTTCTGACATTTGGAGACACAGTGACATT

Ace file of the UniGene biog3_v1.0_unigene17855

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene747	1/2
SustainPine v2.0	sp_v2.0_unigene5625	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO	-	-	66%
FL-Next	sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	probable phosphatidylinositol 4-kinase type 2-beta at1g26270-like	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	70%
Blast2go	Lipopolysaccharide biosynthesis	00540	70%
Blast2go	Nicotinate and nicotinamide metabolism	00760	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	70%
Blast2go	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	70%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9C671

Fln msg: Distance to subject end: 539 aas, your sequence is shorter than subject: 89 - 630

Fln protein: MPPNKDSPVQVQMAVAVLDGAVNRQYHGFKKMDRKQSGRRRVFVQTDTGSVFSIELDREDNAHTVKRKMQMALNVPTEENFLTFGDTVT

Protein Length: 90

Fln nts: AATGTATCCTCGAATACTCCCTTGAAAACCTCCTGGAAATTCATGTTTAGGATTTATTTGTGGAACCACTGTCACCAATTTTGAGAGGCTATAAAGTCAAGTTTGATTGATTTTCGTAGTTCTTTGTTGCATAATTTCCTGGTGTTGATCTCCACTGTTGAGGAGTTTTTCTTTCCGAAGAAAGCAGATTACAATTT_-_ATGCCTCCCAACAAGGATAGTCCGGTACAAGTACAAATGGCTGTTGCTGTTCTAGATGGTGCTGTTAATAGGCAATATCATGGCTTTAAGAAAATGGACCGAAAGCAATCAGGGAGGAGGCGTGTATTTGTTCAAACAGACACGGGCAGTGTTTTCAGCATTGAACTGGACCGAGAAGACAATGCGCACACTGTTAAAAGGAAGATGCAGATGGCCTTGAATGTACCCACTGAAGAAAATTTTCTGACATTTGGAGACACAGTGACATT

Fln Alignment:

biogeco3_mira_c14597___DSPVQVQMAVAVLDGAVNRQYHGFKKMDRKQS-GRRRVFVQTDTGSVFSIELDREDNAHTVKRKMQMALNVPTEENFLTFGDTV
Q9C671__________________DSPIKTQMAVALVKSPLNGEFREFNKVGMKTPVGRRRVFVQTETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain