SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17791

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene17791
AATGTCCAAAAGTTTATACGTACATTCCGAATCAAGACAAGCCTGATAAAGCTTTTATGACTGATCGCGCAAAACGAAAGGGTTTATCAAATGCAGCTAGTGGACGAATTTTTGTTACTGTTCCACCAGATCACTTTGGTCCAATACTTCCAGAGAATGATCCAGAACGACACCAGGGTGTGCTTGTGGGAGAATGCTGGGCAGACAGAATGGAATGCAGGCA

Ace file of the UniGene biog3_v1.0_unigene17791

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene739	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	YDG_SRA multi-domain protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	zinc finger	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of methylation-dependent chromatin silencing	GO:0090309	Biological Process	73%
Blast2go	centromeric heterochromatin assembly	GO:0031508	Biological Process	73%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	73%
Blast2go	cell division	GO:0051301	Biological Process	73%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	histone binding	GO:0042393	Molecular Function	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	methyl-CpNpN binding	GO:0010429	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	double-stranded methylated DNA binding	GO:0010385	Molecular Function	73%
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	73%
Blast2go	chromatin binding	GO:0003682	Molecular Function	73%
Blast2go	methyl-CpNpG binding	GO:0010428	Molecular Function	73%
Blast2go	chromocenter	GO:0010369	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: Distance to subject end: 538 aas, your sequence is shorter than subject: 73 - 830

Fln protein: CPKVYTYIPNQDKPDKAFMTDRAKRKGLSNAASGRIFVTVPPDHFGPILPENDPERHQGVLVGECWADRMECR

Protein Length: 74

Fln nts: AATGTCCAAAAGTTTATACGTACATTCCGAATCAAGACAAGCCTGATAAAGCTTTTATGACTGATCGCGCAAAACGAAAGGGTTTATCAAATGCAGCTAGTGGACGAATTTTTGTTACTGTTCCACCAGATCACTTTGGTCCAATACTTCCAGAGAATGATCCAGAACGACACCAGGGTGTGCTTGTGGGAGAATGCTGGGCAGACAGAATGGAATGCAGGCA

Fln Alignment:

biogeco3_mira_c14507___PKVYTYIPNQDKPDKAFMTDRAKRKGLSNAASGRIFVTVPPDHFGPILPENDPERHQGVLVGECWADRMECR
B8LQP3__________________PKVYTYIQNQDKPDKAFMTDRAKRKGLSNAASGRIFVTVPPDHFGPILAENDPERNQGVLVGECWGDRMECR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain