SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17779

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene17779
TTTCGCAATCGTTCTTCCGCCACAACTTAACTCAAGTATTTGAAGTTGATCTTAGAATACTGTCGTTTTCATCAAGTTCCAGGTCGCTCTAACAAGGACGAAAAATATTTGATGAAAGGTTATTCGTCTAGATACAAAGAGGTTATGCGAGCTGACTTCAGCCGCTGATAGCCTTCAGATGAAACCTTTAGTTGATTTGAC

Ace file of the UniGene biog3_v1.0_unigene17779

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1938	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RDT2_RICCO	-	-	76%
FL-Next	sp=SKP1-like protein 21; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	skp1-like protein 21-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	90%
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	90%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	90%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	90%
Blast2go	positive regulation of protein export from nucleus	GO:0046827	Biological Process	90%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	90%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	90%
Blast2go	detection of brassinosteroid stimulus	GO:0009729	Biological Process	90%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	90%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	90%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	90%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LF97

Fln msg: Separated hits, possible frame ERROR between 105 and 116, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 228 aas, your sequence is shorter than subject: 67 - 351

Fln protein: FRNRSSATT*LKYLKLILEYCRFHQVPGRSNKDExxxxxKVIRLDTKRLCELTSAADSLQMKPLVDL

Protein Length: 68

Fln nts: TTTCGCAATCGTTCTTCCGCCACAACTTAACTCAAGTATTTGAAGTTGATCTTAGAATACTGTCGTTTTCATCAAGTTCCAGGTCGCTCTAACAAGGACGAAAAxxxxxxxxxxxxAAAGGTTATTCGTCTAGATACAAAGAGGTTATGCGAGCTGACTTCAGCCGCTGATAGCCTTCAGATGAAACCTTTAGTTGATTTGAC

Fln Alignment:

biogeco3_mira_c14493___LKLILEYCRFHQVPGRSNKDEKxxxxKVIRLDTKRLCELTSAADSLQMKPLVDL
Q8LF97__________________LSLIFDYCRFHQVPGRSNKERKxxxxKFIRMDTKRLCELTSAADSLQLKPLVDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain