SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17770

Length: 209 nt

UniGene Fasta

>biog3_v1.0_unigene17770
AATGTCATCATATCTACAATCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTGGAGAAGCATCCACATTCAAGAGTCTGAAAGCCGTTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACCATCTCGTCACTGATGCTTTTATA

Ace file of the UniGene biog3_v1.0_unigene17770

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32176	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase, putative n=1 Tax=Ricinus communis RepID=B9T602_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	heparanase-like protein 3-like	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 69 - 381

Fln protein: CHHIYNLGAGVDEHLVEKILDPSYLSGEASTFKSLKAVLQEYGPWSSAWVGEAGGAYNSGHHLVTDAFI

Protein Length: 70

Fln nts: AATGTCATCATATCTACAATCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTGGAGAAGCATCCACATTCAAGAGTCTGAAAGCCGTTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACCATCTCGTCACTGATGCTTTTATA

Fln Alignment:

biogeco3_mira_c14480___HHIYNLGAGVDEHLVEKILDPSYLSGEASTFKSLKAVLQEYGPWSSAWVGEAGGAYNSGHHLVTDAFI
B8LM26__________________HHFYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain