SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17659

Length: 234 nt

UniGene Fasta

>biog3_v1.0_unigene17659
TGCCAGCAACCAGGGCATTGGGCTAAGGACTGTGTGGCATCAACTTATGCATGTCCAGACAGAGGCGATGAATCTGGCCCTCAAGCGCCGGAAAACAGTGCCCGTGTGGTGGAGGACCTTGTCTTGTCTTGATTTCAAGTACCGAGAAAATCCAGGCCGAAGATTTTACAGGTGCCCTGTGAGAGAGGATGGTGGTAGATGCAAATTTTTTGAATGGTGTGACGCTGCTCAAGG

Ace file of the UniGene biog3_v1.0_unigene17659

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6025	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CCHC-type zinc knuckle protein [Arabidopsis thaliana] emb\|CAB86673.1\| putative protein [Arabidopsis thaliana] gb\|AAL38752.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91719.1\| unknown protein [Arabidopsis thaliana] gb\|AEE77756.1\| CCHC-type zinc knuckle	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	zinc knuckle (cchc-type) family protein	-	-	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	50%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	50%

Source	InterPros	Term	Type	Identity
Sma3		IPR013084	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, GRF-type	IPR010666	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPJ7

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 118 aas, your sequence is shorter than subject: 78 - 374

Fln protein: CQQPGHWAKDCVASTYACPDRGDESxxxxxxxQCPCGGGPCxxxxxxxxxxxxxxxxRCPVREDGGRCKFFEWCDAAQ

Protein Length: 79

Fln nts: TGCCAGCAACCAGGGCATTGGGCTAAGGACTGTGTGGCATCAACTTATGCATGTCCAGACAGAGGCGATGAATCTxxxxxxxxxxxxxxxxxxxxxCAGTGCCCGTGTGGTGGAGGACCTTGTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGGTGCCCTGTGAGAGAGGATGGTGGTAGATGCAAATTTTTTGAATGGTGTGACGCTGCTCAAGG

Fln Alignment:

biogeco3_mira_c14325___CQQPGHWAKDCVASTYACPDRGDESGxxxxxKQCPCGGGPCLVLISSTEKIQAEDFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDFKYRENPGRRFYRCPVREDGGRCKFFEWCD
B8LPJ7__________________CQQPGHWAKDCVASTYAGPNRGDESGxxxxxKQCPCGGGPCLVLMSSTEKNPGRKFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTAKTERNSGRQFFRCPLKEGEGSCRFFKWCD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain