SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17647

Length: 222 nt

UniGene Fasta

>biog3_v1.0_unigene17647
AATGTATTCGACTAGGTGTGAACATGCCTGCCAGGGCGAATCGTAGGCCACCAAGAAGTGAACGTGATTCTCATCCTGAGGGAGAGTTGTTTCGTGAGGATTATGACGTAGTGTTATATTTTGGAATTATTGATATTCTTCAAGACTATGATATCACTAAGAAACTTGAACATGCGTACAAGTCTTTGCAATTTGATTCTCTACATTTCAGCTGTAGATCCG

Ace file of the UniGene biog3_v1.0_unigene17647

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37463	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphatidylinositol phoshate kinase n=2 Tax=Physcomitrella patens RepID=B5TVL9_9BRYO	-	-	4.0e-18	66%
FL-Next	sp=Phosphatidylinositol-4-phosphate 5-kinase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	protein	-	-	1.4539e-21	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.4539e-21	84%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	MORN motif	IPR003409	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup	IPR016034	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, plant	IPR017163	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SFB8

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 73 - 715

Fln protein: CIRLGVNMPARANRRPPRSERDSHPEGELFREDYDVVLYFGIIDILQDYDITKKLEHAYKSLQFDSLHFSCRS

Protein Length: 74

Fln nts: AATGTATTCGACTAGGTGTGAACATGCCTGCCAGGGCGAATCGTAGGCCACCAAGAAGTGAACGTGATTCTCATCCTGAGGGAGAGTTGTTTCGTGAGGATTATGACGTAGTGTTATATTTTGGAATTATTGATATTCTTCAAGACTATGATATCACTAAGAAACTTGAACATGCGTACAAGTCTTTGCAATTTGATTCTCTACATTTCAGCTGTAGATCCG

Fln Alignment:

biogeco3_mira_c14310___IRLGVNMXXXXXXXXXXSERDSHPEGELFREDYDVVLYFGIIDILQDYDITKKLEHAYKSLQFDSLHFS
Q9SFB8__________________IKLGINMPARVERTARRSDCENQLVGDPTGEFYDVIVYFGIIDILQDYDISKKLEHAYKSMQYDPTSIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain