SustainPineDB

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Assembly info
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17609

Length: 209 nt

UniGene Fasta

>biog3_v1.0_unigene17609
AATGTAACTTATAAGGATTGAGCTCAGAGTGTCCTAGAATATGGGTGGACAACGCAGTAAGTTTTTCATTTTCTTAATGTTGTTGTGAATGGAGTTCGGTGTGTTGTCTTTATATTTCGCCGAAGTGTGCAGTACATAAAACCTGCGATTTTGCTACATGTTTTGCTTGATATGCCTGGCCTGCTATTTTTTACCACGTATACTCTGTT

Ace file of the UniGene biog3_v1.0_unigene17609

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10642	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	tobamovirus multiplication protein 3 [Arabidopsis thaliana] dbj\|BAB64308.1\| TOM3 [Arabidopsis thaliana] gb\|AAC97216.2\| expressed protein [Arabidopsis thaliana] dbj\|BAC41898.1\| unknown protein [Arabidopsis thaliana] gb\|AEC05557.1\| tobamovirus multiplicatio	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tobamovirus multiplication 1 homolog	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	viral replication complex formation and maintenance	GO:0046786	Biological Process	0.0	85%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1084	IPR009457	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQF7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 169 aas, your sequence is shorter than subject: 69 - 280

Fln protein: NVTYKD*AQSVLEYGWTTQ*VFHFLNVVVNGVRCVVFIFRRSVQYIKPAILLHVLLDMPGLLFFTTYTL

Protein Length: 70

Fln nts: AATGTAACTTATAAGGATTGAGCTCAGAGTGTCCTAGAATATGGGTGGACAACGCAGTAAGTTTTTCATTTTCTTAATGTTGTTGTGAATGGAGTTCGGTGTGTTGTCTTTATATTTCGCCGAAGTGTGCAGTACATAAAACCTGCGATTTTGCTACATGTTTTGCTTGATATGCCTGGCCTGCTATTTTTTACCACGTATACTCTGTT

Fln Alignment:

biogeco3_mira_c14260___VLEYGWTTQ*VFHFLNXXXXXXXXXXFIFRRSVQYIKPAILLHVLLDMPGLLFFTTYTL
B8LQF7__________________VPEYGWTTQKVFHFLNVVVNGVRCVVFIFRRSVQYIKPEILLHVLLDMPGLLFFTTYTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain