SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17556

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene17556
AATGTCACCTTTCTCGTTTATGCAATGCTATGTAGTTCGAAGGACCTTGCCGTGGGAACCGTTGCCGTTGTATCTCTCCTTCTGACATCCCTCTTTAGCAGTGAGGTCTCTCCAGTGGAGAATCCAGTCTTATATTTGCACTTGGCCTTCACAGCAACCTTTCTTGCAGGGATTTTTCAAACAGCTTTGGGCATTTTCAGGTTGGGATTCATCATAGACTTCCTGTCACATGCAACTATAATAGGATT

Ace file of the UniGene biog3_v1.0_unigene17556

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11414	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 n=5 Tax=Populus RepID=B9H8C3_POPTR	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	sulfate bicarbonate oxalate exchanger and transporter sat-1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	82%
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1C0

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 82 - 251

Fln protein: NVTFLVYAMLCSSKDLAVGTVAVVSLLLTSLFSSEVSPVENPVLYLHLAFTATFLAGIFQTALGIFRLGFIIDFLSHATIIG

Protein Length: 83

Fln nts: AATGTCACCTTTCTCGTTTATGCAATGCTATGTAGTTCGAAGGACCTTGCCGTGGGAACCGTTGCCGTTGTATCTCTCCTTCTGACATCCCTCTTTAGCAGTGAGGTCTCTCCAGTGGAGAATCCAGTCTTATATTTGCACTTGGCCTTCACAGCAACCTTTCTTGCAGGGATTTTTCAAACAGCTTTGGGCATTTTCAGGTTGGGATTCATCATAGACTTCCTGTCACATGCAACTATAATAGGATT

Fln Alignment:

biogeco3_mira_c14173___LVYAMLCSSKDXXXXXXXXXXXXXXXXXXXXXXPVENPVLYLHLAFTATFLAGIFQTALGIFRLGFIIDFLSHATIIG
A9P1C0__________________LIYAILGSSTDLAVGTIAVVSILLASMLSHEVSPIHNPELYVRLAMTATFFAGVFQASLGIFRLGFIVDLLSHATIVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain