SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17523

Length: 230 nt

UniGene Fasta

>biog3_v1.0_unigene17523
AATGTAACAGGAATCTCTGCGCAGCTGCCTTCATTTGTGAACCACAACGCTAATTTCTTCTGATTGGTGTTTGGCTTAGTGTGTACCCTGTAACAATGTTGGTATTCCAGGCAGAGAAAATTTGAAACCAAAGGTGAATGTTCTGAAGAGAAATTGGGGAAAGAACGACGAGTGGCACTGGTTATAGGGGTAACGGGAATCGTGGGCAATAGCTTGGCAGAAATCTTGCC

Ace file of the UniGene biog3_v1.0_unigene17523

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2208	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Progesterone 5beta reductase-A n=4 Tax=Solanaceae RepID=C0SUC5_TOBAC	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	progesterone 5-beta-reductase	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	75%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	75%
Blast2go	steroid metabolic process	GO:0008202	Biological Process	75%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	75%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	75%
Blast2go	enone reductase activity	GO:0035671	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ6

Fln msg: Distance to subject end: 345 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 45 - 399

Fln protein: QCWYSRQRKFETKGECSEEKLGKERRVALVIGVTGIVGNSLAEIL

Protein Length: 46

Fln nts: AATGTAACAGGAATCTCTGCGCAGCTGCCTTCATTTGTGAACCACAACGCTAATTTCTTCTGATTGGTGTTTGGCTTAGTGTGTACCCTGTAACA_-_ATGTTGGTATTCCAGGCAGAGAAAATTTGAAACCAAAGGTGAATGTTCTGAAGAGAAATTGGGGAAAGAACGACGAGTGGCACTGGTTATAGGGGTAACGGGAATCGTGGGCAATAGCTTGGCAGAAATCTTGCC

Fln Alignment:

biogeco3_mira_c14118___RKFETKGECSEEKLGKERRVALVIGVTGIVGNSLAEIL
B8LLZ6__________________RKFETKGESSEDKSEKQQGVALVIGVTGIVGNSLVEIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain