SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17408

Length: 230 nt

UniGene Fasta

>biog3_v1.0_unigene17408
AATGTCCTTTTAGATAGAACTGTTCAATGTCTTCATCTTCTGCTGGAAATCTTCTAGTTGTGTTTTTCATCCAGCGATGTCGCTACCCTGAAGCGTATCAGATTCATAAAAGGCTTTGCGAGTTGGAACAACAATCTATATCCCAAAGTATTGATAAGAAAATGGTCGAGAGAATTGAAATTGCGTGTGAATGGAGAACGCGGTTGATTGAAAATGTATTGAGTTGCTAC

Ace file of the UniGene biog3_v1.0_unigene17408

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27875	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	HOS1 n=1 Tax=Citrus trifoliata RepID=D6BP27_PONTR	-	-	44%
FL-Next	sp=E3 ubiquitin-protein ligase HOS1; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	e3 ubiquitin-protein ligase hos1-like	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	62%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	62%
Blast2go	cytoplasm	GO:0005737	Cellular Component	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84JU6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 259 aas, your sequence is shorter than subject: 76 - 927

Fln protein: CPFR*NCSMSSSSAGNLLVVFFIQRCRYPEAYQIHKRLCELEQQSISQSIDKKMVERIEIACEWRTRLIENVLSCY

Protein Length: 77

Fln nts: AATGTCCTTTTAGATAGAACTGTTCAATGTCTTCATCTTCTGCTGGAAATCTTCTAGTTGTGTTTTTCATCCAGCGATGTCGCTACCCTGAAGCGTATCAGATTCATAAAAGGCTTTGCGAGTTGGAACAACAATCTATATCCCAAAGTATTGATAAGAAAATGGTCGAGAGAATTGAAATTGCGTGTGAATGGAGAACGCGGTTGATTGAAAATGTATTGAGTTGCTAC

Fln Alignment:

biogeco3_mira_c13966___SSSAGNLLVVFFIQRCRYPEAYQIHKRLCELEQQSISQS-IDKKMVERIEIACEWRTRLIENVL
Q84JU6__________________SSAVGSLLVVFYLQRYRYIQAYQVDLRLQKIEEAFVSDNQIGEEVMFRMRSQSHWRKELVDRAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain