SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17404

Length: 234 nt

UniGene Fasta

>biog3_v1.0_unigene17404
AATGTGCTAAGCAAAATGAGAATATTGAATTTTATGTGTAATTCCTTTGGATGTTCTGCTTCTGGAGAACGACTAGTTTCTGCTGCTAGAGACGGAGATTTGCAAGAAGCTAAGGCTTTATTGGAATGCAACCCTCGTCTTGCAAAGTATTCGACCTTTGGTGTTCGAAATTCTCCTTTGCATTATTCAGCAGCTCAAGGACACAATGAGATTGTCTCTCTTTTGCTTGAATCT

Ace file of the UniGene biog3_v1.0_unigene17404

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6465	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ankyrin repeat-rich protein [Solanum tuberosum]	-	-	66%
FL-Next	sp=E3 ubiquitin-protein ligase XBAT32; Arabidopsis thaliana (Mouse-ear cress).	-	-	86%
Blast2go	ankyrin repeat-rich protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	signal peptide processing	GO:0006465	Biological Process	76%
Blast2go	peptidase activity	GO:0008233	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Acetohydroxy acid isomeroreductase	IPR013023	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q6NLQ8

Fln msg: Distance to subject end: 435 aas, your sequence is shorter than subject: 73 - 508

Fln protein: MRILNFMCNSFGCSASGERLVSAARDGDLQEAKALLECNPRLAKYSTFGVRNSPLHYSAAQGHNEIVSLLLES

Protein Length: 74

Fln nts: AATGTGCTAAGCAAA_-_ATGAGAATATTGAATTTTATGTGTAATTCCTTTGGATGTTCTGCTTCTGGAGAACGACTAGTTTCTGCTGCTAGAGACGGAGATTTGCAAGAAGCTAAGGCTTTATTGGAATGCAACCCTCGTCTTGCAAAGTATTCGACCTTTGGTGTTCGAAATTCTCCTTTGCATTATTCAGCAGCTCAAGGACACAATGAGATTGTCTCTCTTTTGCTTGAATCT

Fln Alignment:

biogeco3_mira_c13961___MRILNFMCNSFGCSASGERLVSAARDGDLQEAKALLECNPRLAKYSTFGVRNSPLHYSAAQGHNEIVSLLLES
Q6NLQ8__________________MRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLVES

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain