SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17361

Length: 353 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17361
AATGTTAATATATGTTGCATAATGAATAGTTCAAGGGCGACTATAGGTTCCAAGCTGAAATCACAGGGCATGATGGTGATGAATAAGAGAATTCAATCCAAGGCATTTGCCCTATCCACCACCATCTTGGCCATTGGATTCGTAGTTTTGATGAGTCAACAAGCTTCTCTGCATTGGAGATCTGAGTGGTACAAAGGAGCCGCAGATACTGTTAAGTTTCCAGGATCATACAAGGAAGGTGAAGGAATAGTCTGTGACAGATCCCATTTTCGTACAGACTTGTGCACTGCTTTTGGACATGTTCAGATGCATGCAAATTTGAGTTCGATCCTGCTTCATGCGCAAGATACATT

Ace file of the UniGene biog3_v1.0_unigene17361 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4058	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase belonging to CAZy family GT61 n=1 Tax=Selaginella moellendorffii RepID=D8T2A2_SELML	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	glycosyltransferase family 61 protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyltransferase AER61, uncharacterised	IPR007657	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR53

Fln msg: Distance to subject end: 345 aas, your sequence is shorter than subject: 110 - 456

Fln protein: MNSSRATIGSKLKSQGMMVMNKRIQSKAFALSTTILAIGFVVLMSQQASLHWRSEWYKGAADTVKFPGSYKEGEGIVCDRSHFRTDLCTAFGHVQMHANLSSILLHAQDT

Protein Length: 111

Fln nts: AATGTTAATATATGTTGCATA_-_ATGAATAGTTCAAGGGCGACTATAGGTTCCAAGCTGAAATCACAGGGCATGATGGTGATGAATAAGAGAATTCAATCCAAGGCATTTGCCCTATCCACCACCATCTTGGCCATTGGATTCGTAGTTTTGATGAGTCAACAAGCTTCTCTGCATTGGAGATCTGAGTGGTACAAAGGAGCCGCAGATACTGTTAAGTTTCCAGGATCATACAAGGAAGGTGAAGGAATAGTCTGTGACAGATCCCATTTTCGTACAGACTTGTGCACTGCTTTTGGACATGTTCAGATGCATGCAAATTTGAGTTCGATCCTGCTTCATGCGCAAGATACATT

Fln Alignment:

biogeco3_mira_c13901___MNSSRATIGSKLKSQGMMVMNKRIQSKAFALSTTILAIGFVVLMSQQASLHWRSEWYKGAADTVKFPGSYKEGEGIVCDRSHFRTDLCTAFGHVQMHANLSSILLHAQD
B8LR53__________________MNSARPIIGSKLKSQGMMVMNKRIQSKAFALSTTILAIGFVVLLSQQASLYWRSEWNKRAADTVMFPGSYNEGEGIVCDRSHFRTDLCTAFGHVQMLANLSSFLLHAQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain