SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17351

Length: 211 nt

UniGene Fasta

>biog3_v1.0_unigene17351
AATGTGATTATAAGGCCAATCTTGATAATGGAATGTTTGTTTCTACGTAATCCCATGAAATGATGAGTACTTCTTCTATCATGAGACAGATTCAGGATGAGTTGTAGGTTATAGGCACAGTCAGGCATATAAATCTTGCGGTATTGCTAGCTTATATTCGACAGCACAATGCCCATCTATTAAAATATGATTTCATGACCAATGTTAGTCT

Ace file of the UniGene biog3_v1.0_unigene17351

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80533	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	2.78613e-11	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 199 aas, your sequence is shorter than subject: 69 - 737

Fln protein: CDYKANLDNGMFVST*SHEMMSTSSIMRQIQDEL*VIGTVRHINLAVLLAYIRQHNAHLLKYDFMTNVS

Protein Length: 70

Fln nts: AATGTGATTATAAGGCCAATCTTGATAATGGAATGTTTGTTTCTACGTAATCCCATGAAATGATGAGTACTTCTTCTATCATGAGACAGATTCAGGATGAGTTGTAGGTTATAGGCACAGTCAGGCATATAAATCTTGCGGTATTGCTAGCTTATATTCGACAGCACAATGCCCATCTATTAAAATATGATTTCATGACCAATGTTAGTCT

Fln Alignment:

biogeco3_mira_c13887___RQIQDEL*VIGTVRHINLAVLLAYIRQHNAHLLKYDFMTNVS
C0PPN7__________________RQIRSELETLGQIRHRNLVALLAYVARPDCHLLVYEYMKNGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain