SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17349

Length: 183 nt

UniGene Fasta

>biog3_v1.0_unigene17349
TATGTCCAACATTCCGGAGGAGGATCAGCAACGAATGACCAAGATGATCGAGCAATTTCAGATAAGAGACAGTCTGAGGATGTATAATTCATTGGTGGAAAGGTGCTTTGACCATTGTGTCGATAGTTTTCGCCGCAAGTCCCTGGACAAGCAGGAAGAGACGTGTGTTCAACGCTGCGCAGA

Ace file of the UniGene biog3_v1.0_unigene17349

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18975	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Mitochondrial import inner membrane translocase subunit Tim9 gb\|AAD40018.1\|AF150112_1 small zinc finger-like protein [Mesembryanthemum crystallinum]	-	-	8.0e-34	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	mitochondrial import inner membrane translocase subunit tim9	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	86%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like	IPR004217	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM74

Fln msg: Distance to subject end: 24 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 60 - 93

Fln protein: MSNIPEEDQQRMTKMIEQFQIRDSLRMYNSLVERCFDHCVDSFRRKSLDKQEETCVQRCA

Protein Length: 61

Fln nts: T_-_ATGTCCAACATTCCGGAGGAGGATCAGCAACGAATGACCAAGATGATCGAGCAATTTCAGATAAGAGACAGTCTGAGGATGTATAATTCATTGGTGGAAAGGTGCTTTGACCATTGTGTCGATAGTTTTCGCCGCAAGTCCCTGGACAAGCAGGAAGAGACGTGTGTTCAACGCTGCGCAGA

Fln Alignment:

biogeco3_mira_c13885___MSNIPEEDQQRMTKMIEQFQIRDSLRMYNSLVERCFDHCVDSFRRKSLDKQEETCVQRCA
B8LM74__________________MTNIPEEDQQRMTKMIEQFQIRDSLRMYNSLVERCFDHCVDSFRRKSLDKQEETCVQRCA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain