SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17319

Length: 306 nt

UniGene Fasta

>biog3_v1.0_unigene17319
AATGTGGATTTGATTGCTGGCAGATGTCCCTCTGCAACTCTGACAACTAATGGGCAGAGGCAAGCCCGGGCTTTGGCTGTGTTCCTGAATTCACAGGGGCTTCGGTTTGATGAGGTGTATTCTTCCCCTCTGGAGCGTGCCAAACAAACAGCATTGTTCGTCTGCCAGGAACTAAATATACTGGAGGAGAAGATAGTGTGGTCTGATGAGCTGATAGAAATGAGTGAAGGGCAGTGGGAAGGCTGCCATTCTTCAGATATATACACTCCTGAAATGGTCAATATTATCAATAGATCTCAGCCCGAC

Ace file of the UniGene biog3_v1.0_unigene17319

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5461	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate mutase, putative n=1 Tax=Ricinus communis RepID=B9RGZ7_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	fructose- -bisphosphatase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	RNA modification	GO:0009451	Biological Process	63%
Blast2go	cytosol	GO:0005829	Cellular Component	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4	IPR017070	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H437

Fln msg: Distance to subject end: 332 aas, your sequence is shorter than subject: 102 - 560

Fln protein: NVDLIAGRCPSATLTTNGQRQARALAVFLNSQGLRFDEVYSSPLERAKQTALFVCQELNILEEKIVWSDELIEMSEGQWEGCHSSDIYTPEMVNIINRSQPD

Protein Length: 103

Fln nts: AATGTGGATTTGATTGCTGGCAGATGTCCCTCTGCAACTCTGACAACTAATGGGCAGAGGCAAGCCCGGGCTTTGGCTGTGTTCCTGAATTCACAGGGGCTTCGGTTTGATGAGGTGTATTCTTCCCCTCTGGAGCGTGCCAAACAAACAGCATTGTTCGTCTGCCAGGAACTAAATATACTGGAGGAGAAGATAGTGTGGTCTGATGAGCTGATAGAAATGAGTGAAGGGCAGTGGGAAGGCTGCCATTCTTCAGATATATACACTCCTGAAATGGTCAATATTATCAATAGATCTCAGCCCGAC

Fln Alignment:

biogeco3_mira_c13846___DLIAGRCPSATLTTNGQRQARALAVFLNSQGLRFDEVYSSPLERAKQTALFVCQELNILEEKIVWSDELIEMSEGQWEGCHSSDIYTPEMVNIINRSQPD
F6H437__________________DLVAGRCPGAGLTPNGKRQARALAVFLNSQGIRFNAVYSSPLDRARATAASVCQELNFAEEQIQPSDALVEMSQGHWEGCPRSEIYTPEMLSLMERFQPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain