SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17300

Length: 306 nt

UniGene Fasta

>biog3_v1.0_unigene17300
ATTGCTGTTTATTGGGAAGGGAATGATCCTGGTTGTGATGGATGCTTAACGTATAACGAACTGCTCATGAAGGTTTGCCAGCTTTCAAACTATTTGAAGGATATTGGCGTCAAGAAAGGAGATGCAGTGGCAATTTATTTGCCTATGTTAGCAGAACTGCCGATAGCAATTCTTGCTTGTGCTCGTATTGGTGCTGTTCATTCGGTTGTATTTGCTGGATTTTCAGCAGAGTCCCTTGCTCAAAGAATTATAGACTGCAAACCTAAAGCACTGCTAACTTGTAATGCTGTCCGCCGGGGTGCTAAA

Ace file of the UniGene biog3_v1.0_unigene17300

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10194	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	acetyl-CoA synthetase [Arabidopsis thaliana] dbj\|BAH19803.1\| AT5G36880 [Arabidopsis thaliana] gb\|AED94121.1\| acetyl-CoA synthetase [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	acetyl- synthetase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetate--CoA ligase.	EC:6.2.1.1	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	83%
Blast2go	Pyruvate metabolism	00620	83%
Blast2go	Propanoate metabolism	00640	83%
Blast2go	Methane metabolism	00680	83%
Blast2go	Carbon fixation pathways in prokaryotes	00720	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	acetate metabolic process	GO:0006083	Biological Process	83%
Blast2go	AMP binding	GO:0016208	Molecular Function	83%
Blast2go	acetate-CoA ligase activity	GO:0003987	Molecular Function	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%
Blast2go	cytosol	GO:0005829	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Acetate-CoA ligase	IPR011904	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR72

Fln msg: Distance to subject end: 433 aas, your sequence is shorter than subject: 102 - 734

Fln protein: IAVYWEGNDPGCDGCLTYNELLMKVCQLSNYLKDIGVKKGDAVAIYLPMLAELPIAILACARIGAVHSVVFAGFSAESLAQRIIDCKPKALLTCNAVRRGAK

Protein Length: 103

Fln nts: ATTGCTGTTTATTGGGAAGGGAATGATCCTGGTTGTGATGGATGCTTAACGTATAACGAACTGCTCATGAAGGTTTGCCAGCTTTCAAACTATTTGAAGGATATTGGCGTCAAGAAAGGAGATGCAGTGGCAATTTATTTGCCTATGTTAGCAGAACTGCCGATAGCAATTCTTGCTTGTGCTCGTATTGGTGCTGTTCATTCGGTTGTATTTGCTGGATTTTCAGCAGAGTCCCTTGCTCAAAGAATTATAGACTGCAAACCTAAAGCACTGCTAACTTGTAATGCTGTCCGCCGGGGTGCTAAA

Fln Alignment:

biogeco3_mira_c13815___IAVYW--EGNDPGCDGCLTYNELLMKVCQLSNYLKDIGVKKGDAVAIYLPMLAELPIAILACARIGAVHSVVFAGFSAESLAQRIIDCKPKALLTCNAVRRGAK
C0PR72__________________IAIIWREEGRDEDPVNKMTLRELRARVMQVANAL-DMVFTKGDAVAIDMPMTVDAVVVYFALVLAGYVVVSIADSFAPKEIATRIRVSKAKGIFTQDFILRGRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain