SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17288

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17288
AATGTTGTCTTGGCAGTTCTGCCCCCGTCCATGCAACTCGATCTTCTTGTTCAGATGAGAGAACAACTGATGGCTGATAACAGGCAAAAGTTTCAGAAAGTTAAGAAGGCCCCGGCATCATTTTCTCAGTTACAGATAGAAGCATATCTCAAAACTGTAGCTTTTCGTCGTGAGATTGAAGAAGTTCAGAAATCTGCAGCTGGGAAGGGTATCGGTGGCATGCAAACATCACGGATTGCCTCTGAATCTGGCCGGGAGTTCGTGTTTTCTTCAACATTTTCCGGTGACAAACAGGCATTACAGTTTCCTGACATT

Ace file of the UniGene biog3_v1.0_unigene17288 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37166	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair protein UVH3 [Arabidopsis thaliana] sp\|Q9ATY5.1\|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltNa	-	-	9.0e-37	77%
FL-Next	sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	dna-repair protein	-	-	1.4013e-45	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	1.4013e-45	89%
Blast2go	non-photoreactive DNA repair	GO:0010213	Biological Process	1.4013e-45	89%
Blast2go	response to heat	GO:0009408	Biological Process	1.4013e-45	89%
Blast2go	protein binding	GO:0005515	Molecular Function	1.4013e-45	89%
Blast2go	nuclease activity	GO:0004518	Molecular Function	1.4013e-45	89%

Source	InterPros	Term	Type	Identity
Sma3	Xeroderma pigmentosum group G protein	IPR001044	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ATY5

Fln msg: Distance to subject end: 1094 aas, your sequence is shorter than subject: 105 - 1479

Fln protein: NVVLAVLPPSMQLDLLVQMREQLMADNRQKFQKVKKAPASFSQLQIEAYLKTVAFRREIEEVQKSAAGKGIGGMQTSRIASESGREFVFSSTFSGDKQALQFPDI

Protein Length: 106

Fln nts: AATGTTGTCTTGGCAGTTCTGCCCCCGTCCATGCAACTCGATCTTCTTGTTCAGATGAGAGAACAACTGATGGCTGATAACAGGCAAAAGTTTCAGAAAGTTAAGAAGGCCCCGGCATCATTTTCTCAGTTACAGATAGAAGCATATCTCAAAACTGTAGCTTTTCGTCGTGAGATTGAAGAAGTTCAGAAATCTGCAGCTGGGAAGGGTATCGGTGGCATGCAAACATCACGGATTGCCTCTGAATCTGGCCGGGAGTTCGTGTTTTCTTCAACATTTTCCGGTGACAAACAGGCATTACAGTTTCCTGACATT

Fln Alignment:

biogeco3_mira_c13791___VLAVLPPSMQLDLLVQMREQLMADNRQKFQKVKKAPASFSQLQIEAYLKTVAFRREIEEVQKSAAGKGIGGMQTSRIASESGREFVFSSTFSGDKQAL
Q9ATY5__________________VLASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQRSAGGRAVGGVQTSRIASEANREFIFSSSFAGDKEVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain