SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17259

Length: 293 nt

UniGene Fasta

>biog3_v1.0_unigene17259
AATTTGGGTAGTCTTAATGTGCTGAAGGCAGAGCTGTTCTTACTGAATATTATTGCAAGTGGAATATACCAGGAATAAAGACAAGGGTTAAGAATGGCTGCCGCTCTTGTTGAGAGGGCTACCAGTGACATGTTGGTTAGCCCTGATTGGGCAATGAACATTGAGATTTGTGATGTTCTTAATAATGATCCAGGACAAGCAAAGGATGTCATTAAATCAATCAAGAAGCGCATCGGAAATAAGAACCCCAAGATCCAGATTCTTGCACTGACTCTGTTAGAGACTCTTACATT

Ace file of the UniGene biog3_v1.0_unigene17259

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6904	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	0.0	60%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-
Sma3	VHS subgroup	IPR018205	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPG6

Fln msg: Distance to subject end: 528 aas, your sequence is shorter than subject: 66 - 595

Fln protein: MAAALVERATSDMLVSPDWAMNIEICDVLNNDPGQAKDVIKSIKKRIGNKNPKIQILALTLLETLT

Protein Length: 67

Fln nts: AATTTGGGTAGTCTTAATGTGCTGAAGGCAGAGCTGTTCTTACTGAATATTATTGCAAGTGGAATATACCAGGAATAAAGACAAGGGTTAAGA_-_ATGGCTGCCGCTCTTGTTGAGAGGGCTACCAGTGACATGTTGGTTAGCCCTGATTGGGCAATGAACATTGAGATTTGTGATGTTCTTAATAATGATCCAGGACAAGCAAAGGATGTCATTAAATCAATCAAGAAGCGCATCGGAAATAAGAACCCCAAGATCCAGATTCTTGCACTGACTCTGTTAGAGACTCTTACATT

Fln Alignment:

biogeco3_mira_c13754___MAAALVERATSDMLVSPDWAMNIEICDVLNNDPGQAKDVIKSIKKRIGNKNPKIQILALTLLETL
B8LPG6__________________MASSLVERATSDMLIGPDWAMNIEICDIVSSDQGQAKDVVKAVKKRLVNKNSKVQLLSLTLLETL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain