SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17253

Length: 498 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17253
GCAGTTCAAGAGGCAATTCAAGAGGTCAAGAAGCCGCGGCAAGCGTGCGTCCCTTACTGAGGACTCGTGCTTTTGGGCATATGTAGAAGAGGCTTGGAAAGAACTGGAAAATCTGAAACAAGGCCAACACCAAAGCCTACAATGTCTTGAAGAGTTTGAAAAGTATGTGACAACCATGAACGACGCTCTCAAAATTTCTGCAGATGTTTTCTTCGAAGGAAGCAGATACATGACATGGAAGGCAGAATGGGAAAAATACAAAAGAGAGCATTCCCCTCATGGAAAGTGAAAGTTGGAAAGGGCTGAATTTGCAGGAGTTGTGGATAAAACTCTGTTACCTTTATCCAATTAGGTTGCTTGCTTTGTTTTTGAGATGTAATTTCTACTTAAATATTTAAGAAGTAATCTCTGGAACTGTAAGGAAGGAGCTTCCTCCAATTAGATTGCGTGTTTTGTTTACTTCAGTTGTTTAGAATAGTATGATTGTTGTAATACATT

Ace file of the UniGene biog3_v1.0_unigene17253 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24410	1/7
SustainPine v2.0	sp_v2.0_unigene80428	1/7
SustainPine v2.0	sp_v2.0_unigene81085	5/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01764, Lipase_3, Lipase (class 3)	-	-	2.0e-18	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	uncharacterized protein loc100788725	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM08

Fln msg: your sequence is shorter than subject: 96 - 595

Fln protein: QFKRQFKRSRSRGKRASLTEDSCFWAYVEEAWKELENLKQGQHQSLQCLEEFEKYVTTMNDALKISADVFFEGSRYMTWKAEWEKYKREHSPHGK*

Protein Length: 97

Fln nts: GCAGTTCAAGAGGCAATTCAAGAGGTCAAGAAGCCGCGGCAAGCGTGCGTCCCTTACTGAGGACTCGTGCTTTTGGGCATATGTAGAAGAGGCTTGGAAAGAACTGGAAAATCTGAAACAAGGCCAACACCAAAGCCTACAATGTCTTGAAGAGTTTGAAAAGTATGTGACAACCATGAACGACGCTCTCAAAATTTCTGCAGATGTTTTCTTCGAAGGAAGCAGATACATGACATGGAAGGCAGAATGGGAAAAATACAAAAGAGAGCATTCCCCTCATGGAAAGTGA___AAGTTGGAAAGGGCTGAATTTGCAGGAGTTGTGGATAAAACTCTGTTACCTTTATCCAATTAGGTTGCTTGCTTTGTTTTTGAGATGTAATTTCTACTTAAATATTTAAGAAGTAATCTCTGGAACTGTAAGGAAGGAGCTTCCTCCAATTAGATTGCGTGTTTTGTTTACTTCAGTTGTTTAGAATAGTATGATTGTTGTAATACATT

Fln Alignment:

biogeco3_mira_c13747___RQFKRSRSRGKRASLTEDSCFWAYVEEAWKELENLKQGQHQSLQCLEEFEKYVTTMNDALKISADVFFEGSRYMTWKAEWEKYKREHSPHG
B8LM08__________________RSSRGQRTRTKPASLTEDSCFWAYVEEAWKDLENLKQGQHQSLQSLEQFEKYVTTMNNGLKIAPDVFLKGSSYMMWSEEWEKYKRDHSFNG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
52		66		33	0.997452
101	33			66	0.997452
116		25		75	0.996478
137	75			25	0.996473
138		80	20		0.995499
139	75			25	0.996473
160	20			80	0.995499
167	75			25	0.996473
173	33		66		0.997452
178		33		33	0.997752
182	25	75			0.996477
183	75	25			0.996476
184		75		25	0.996477
185	75		25		0.996477
186	75			25	0.996476
226		25	50		0.995533
227	75		25		0.996483
228	50		50		1.0
232	75		25		0.996474
262	25	75			0.996475
263	25	75			0.996475
264			25	75	0.996475
265	25		25	50	0.995563
266		75		25	0.996481

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain