SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17244

Length: 237 nt

UniGene Fasta

>biog3_v1.0_unigene17244
AATGTAAGGCAATCCTATGGCAAATAAAATGAAGTATGTTCTCTCGATTCATTGCTCTTTTGACAGTGCCTATAACAATGAATTTCCCGAAGGCAATATTCTGTTACTGGATTACATCAAACTTGTTCTCACTTGTACATGGTGCAGTAATCAAGATGCCAGGTGTTAAGAGAGCACTGGCTATTCCTGAGATACCTGTGCCACCAAAGGCACCCACAACTCTTGCTGGATCTATCA

Ace file of the UniGene biog3_v1.0_unigene17244

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17389	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome oxidase biogenesis protein, putative n=1 Tax=Ricinus communis RepID=B9RCS4_RICCO	-	-	53%
FL-Next	sp=Mitochondrial inner membrane protein OXA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	inner membrane protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	66%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	66%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	0.0	-
Sma3	Membrane insertion protein, OxaA/YidC	IPR001708	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42191

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 58 aas, your sequence is shorter than subject: 78 - 429

Fln protein: CKAILWQIK*SMFSRFIALLTVPITMNFPKAIFCYWITSNLFSLVHGAVIKMPGVKRALAIPEIPVPPKAPTTLAGSI

Protein Length: 79

Fln nts: AATGTAAGGCAATCCTATGGCAAATAAAATGAAGTATGTTCTCTCGATTCATTGCTCTTTTGACAGTGCCTATAACAATGAATTTCCCGAAGGCAATATTCTGTTACTGGATTACATCAAACTTGTTCTCACTTGTACATGGTGCAGTAATCAAGATGCCAGGTGTTAAGAGAGCACTGGCTATTCCTGAGATACCTGTGCCACCAAAGGCACCCACAACTCTTGCTGGATCTATCA

Fln Alignment:

biogeco3_mira_c13735___RFIALLTVPITMNFPKAIFCYWITSNLFSLVHGAVIKMPGVKRALAIPEIPVPP
Q42191__________________RVFALLTVPMTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKKMLRIPDLPPPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain