SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17137

Length: 292 nt

UniGene Fasta

>biog3_v1.0_unigene17137
TATCGCTCTTTCCGAGCTTGTTCTTAGTGCTACTTCTTATTATTGTGCAGGGAAGCTCGGTCTTGACATCTGACCATAGGAGGCGGAGTAGCAGGCTATCATCGGACCGTGCGGAAAGTTTTTGTCTAGGAATTCGCGCAGGGTATGGAAGACTCTAAATGGTAATATGCCTTTGGTCATAGCTCGGGGTGGGCTATCAGGGCTTTTCCCGGATCATACGACTAATGCATACGAAGTGGCAATGAACAACAGCTTGCCAACAGTTGTACTGTTTTGTGATGTACAATACATT

Ace file of the UniGene biog3_v1.0_unigene17137

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1064	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	-	-	8.0e-21	29%
FL-Next	sp=Probable glycerophosphoryl diester phosphodiesterase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	protein	-	-	0.0	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	65%
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	65%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	65%
Blast2go	anchored to membrane	GO:0031225	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9SZ11

Fln msg: Distance to subject end: 675 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 67 - 759

Fln protein: QAIIGPCGKFLSRNSRRVWKTLNGNMPLVIARGGLSGLFPDHTTNAYEVAMNNSLPTVVLFCDVQYI

Protein Length: 68

Fln nts: TATCGCTCTTTCCGAGCTTGTTCTTAGTGCTACTTCTTATTATTGTGCAGGGAAGCTCGGTCTTGACATCTGACCATAGGAGGCGGAGTAGCAGGCTATCATCGGACCGTGCGGAAAGTTTTTGTCTAGGAATTCGCGCAGGGTATGGAAGACTCTAAATGGTAATATGCCTTTGGTCATAGCTCGGGGTGGGCTATCAGGGCTTTTCCCGGATCATACGACTAATGCATACGAAGTGGCAATGAACAACAGCTTGCCAACAGTTGTACTGTTTTGTGATGTACAATACATT

Fln Alignment:

biogeco3_mira_c13588___SRNSRRVWKTLNGNMPLVIARGGLSGLFPDHTTNAYEVAMNNSLPTVVLFCDVQ
Q9SZ11__________________SKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSVPDAVLWCDVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain