SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17136

Length: 233 nt

UniGene Fasta

>biog3_v1.0_unigene17136
AATGTGGCAACAAGGGATCTATTTCAGTCAGCATGTCCATTTACCAGACAAGTTTTTGCTTTGTTTGTTCTCACTTGACATCTGGTGAGAAGGAAGGGGATGAATCGAGACGAAATTCTGATGTACAAGAAATACTGCGCCGAACACATTTCCCTCCTGTTGCTGGAGTTGAACTGCCTCAGACCATTCTAGAACACGATCGAGTAATCTGGTTTGGAGACTTAAATTATCGT

Ace file of the UniGene biog3_v1.0_unigene17136

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene652	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	inositol-1,4,5-trisphosphate 5-Phosphatase [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	type i inositol- -trisphosphate 5-phosphatase 2-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ8

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 77 - 571

Fln protein: CGNKGSISVSMSIYQTSFCFVCSHLTSGEKEGDESRRNSDVQEILRRTHFPPVAGVELPQTILEHDRVIWFGDLNYR

Protein Length: 78

Fln nts: AATGTGGCAACAAGGGATCTATTTCAGTCAGCATGTCCATTTACCAGACAAGTTTTTGCTTTGTTTGTTCTCACTTGACATCTGGTGAGAAGGAAGGGGATGAATCGAGACGAAATTCTGATGTACAAGAAATACTGCGCCGAACACATTTCCCTCCTGTTGCTGGAGTTGAACTGCCTCAGACCATTCTAGAACACGATCGAGTAATCTGGTTTGGAGACTTAAATTATCGT

Fln Alignment:

biogeco3_mira_c13586___NKGSISVSMSIYQTSFCFVCSHLTSGEKEGDESRRNSDVQEILRRTHFPPVAGVELPQTILEHDRVIWFGDLNYR
B8LLZ8__________________NKGGVCISFKFWDTGLCFVNSHFAA--HDGHCETRNSNYREIVRELR----VGVQNIDLLNQFNHVFWMGDLNYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain