SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17113

Length: 391 nt

UniGene Fasta

>biog3_v1.0_unigene17113
CCATATGAAAATACATCAACCTCAGTGCCCAGGAATTTATCGAACCATCATGGGCGGCTCCTCCTAGGAGTAGTTTTCGAGAGGAGCACAGAAGAGGGCAAGCATCGAGCATGAGATGCTCACGAATATGAGTCTCCTGTTTCTCGACAATCCCACTTCAGTCCTGGACTCGACTACCACTCAGAGAGTAATATTTATGTTACAGAACCTCTCTAGAGGAGGCAGGACCATTGTCCTTCTTGTCCTTCTAATGCTGCAAATCTGCCATGAACATATCTGCAGAATAAGTAATCATAGCAAGACCTACGCACTTCCCTAAGAGTCGAACTCGCGACTAGATGAGATTCCTTCATTGAAGAAACTGCCTATTTTGGCCCTGTCGAAGTATGTT

Ace file of the UniGene biog3_v1.0_unigene17113

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4645	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain-containing protein (Fragment) n=1 Tax=Picea abies RepID=Q3ZDI7_PICAB	-	-	3.0e-13	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	white-brown-complex abc transporter family	-	-	1.67395e-16	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	1.67395e-16	67%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	1.67395e-16	67%
Blast2go	cell part	GO:0044464	Cellular Component	1.67395e-16	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	SET domain	IPR001214	-	0.0	-
Sma3	Rubisco LS methyltransferase, substrate-binding domain	IPR015353	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 360 aas, your sequence is shorter than subject: 106 - 819

Fln protein: HMKIHQPQCPGIYRTIMGGSS*E*FSRGAQKRASIEHEMLTNMSLLFLDNPTSVLDSTTTQRVIFMLQNLSRGGRTIVLLVLLMLQICHEHICRISNHSKTYALP*

Protein Length: 107

Fln nts: CCATATGAAAATACATCAACCTCAGTGCCCAGGAATTTATCGAACCATCATGGGCGGCTCCTCCTAGGAGTAGTTTTCGAGAGGAGCACAGAAGAGGGCAAGCATCGAGCATGAGATGCTCACGAATATGAGTCTCCTGTTTCTCGACAATCCCACTTCAGTCCTGGACTCGACTACCACTCAGAGAGTAATATTTATGTTACAGAACCTCTCTAGAGGAGGCAGGACCATTGTCCTTCTTGTCCTTCTAATGCTGCAAATCTGCCATGAACATATCTGCAGAATAAGTAATCATAGCAAGACCTACGCACTTCCCTAAGAGTCGAACTCGCGACTAGATGAGATTCCTTCATTGAAGAAACTGCCTATTTTGGCCCTGTCGAAGTATGTT

Fln Alignment:

biogeco3_mira_c13553___TIMGGSS*E*FSRGAQKRASIEHEMLTNMSLLFLDNPTSVLDSTTTQRVIFMLQNLSRGGRTIV
B8LNF9__________________TIIGGNFVRGISGGERKRVCIGCEILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIARAGRTVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain