SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17103

Length: 231 nt

UniGene Fasta

>biog3_v1.0_unigene17103
AATGTAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGAGAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAG

Ace file of the UniGene biog3_v1.0_unigene17103

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3713	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter AtABCA1 [Arabidopsis thaliana]	-	-	74%
FL-Next	sp=ABC transporter A family member 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	abc transporter a family member 1	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfate-transporting ATPase.	EC:3.6.3.25	-	0.0	79%
Blast2go		EC:3.6.3.3-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	sulfate transmembrane-transporting ATPase activity	GO:0015419	Molecular Function	79%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84M24

Fln msg: Distance to subject end: 397 aas, your sequence is shorter than subject: 77 - 1882

Fln protein: NVRVLRSLSLFLLFESHASNFEDEDEDVTAERVRVLSGAAKESIIYLQNLRKIYPSSGNQPEKVAVDSLSFAVQEGE

Protein Length: 78

Fln nts: AATGTAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGAGAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAG

Fln Alignment:

biogeco3_mira_c13543___DEDEDVTAERVRVLSGAAKESIIYLQNLRKIYPSSGNQPEKVAVDSLSFAVQEGE
Q84M24__________________EDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain