SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17093

Length: 345 nt

UniGene Fasta

>biog3_v1.0_unigene17093
AATGTTATCTATTGCATGTGTACCTCTGACTGTTGGATATGTCCGACCTCCTTCTCTTGGTTTGGCTAATGTTGATCAGATTAATATAAGATGCAATCCAGCAGGACTGTATCTTGTCTGCATACTCCCTTCAACACTTTGCTCATCCTTTTGCATAGCAAAGTGATGATGTTGGAATACATAATCCTATCCACTGGTCCAGGCCTCTTTCCATTATCTCTTACCCTGTACAATTAAATGTCTGTTTGTAACTCACTTTATGCAGGGTTTTCTCAATGTAAGCTTGACCGTCAGATACTGTTTTGATTTGAATTGGGTCATTGACGTGTCAACGGCTAGCAGTAG

Ace file of the UniGene biog3_v1.0_unigene17093

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28389	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAPPC10 domain containing protein	-	-	2.0e-27	28%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Blast2go	protein club	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell plate assembly	GO:0000919	Biological Process	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TU95

Fln msg: your sequence is shorter than subject: 55 - 108

Fln protein: MLSIACVPLTVGYVRPPSLGLANVDQINIRCNPAGLYLVCILPSTLCSSFCIAK*

Protein Length: 56

Fln nts: AATGTTATCTATTGCATGTGTACCTCTGACTGTTGGATATGTCCGACCTCCTTCTCTTGGTTTGGCTAATGTTGATCAGATTAATATAAGATGCAATCCAGCAGGACTGTATCTTGTCTGCATACTCCCTTCAACACTTTGCTCATCCTTTTGCATAGCAAAGTGA___TGATGTTGGAATACATAATCCTATCCACTGGTCCAGGCCTCTTTCCATTATCTCTTACCCTGTACAATTAAATGTCTGTTTGTAACTCACTTTATGCAGGGTTTTCTCAATGTAAGCTTGACCGTCAGATACTGTTTTGATTTGAATTGGGTCATTGACGTGTCAACGGCTAGCAGTAG

Fln Alignment:

biogeco3_mira_c13530___MLSIACVPLTVGYVRPPSLGLANVDQINIRCNPAGLYLVCILPSTLCSSFCI
D7TU95__________________VISILCMPLMAGYVHPPKLGLPNIDEANISCNPAGPHLVCVLPPVFSSSFCI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain