SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17071

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene17071
TTTCTGTGCGCACTGCTCGCTTCTCTCTTTTACGATTTTGCTGACGCTCAAGCTCGTGTTCCAATGGCACCGCTCCTGGTGGTTTATATTTCTGCCTCTATGGATTTTCATATCATTGTGGCTCGAGGACGATTCTCTTTGCCTGCTCCTGTACCACCTCATGATCGACATTGGGCACCTTGTCATACTGTTGTTGACATT

Ace file of the UniGene biog3_v1.0_unigene17071

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11644	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] gb\|AEE35529.1\| Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	transmembrane fragile-x-f-associated protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV42

Fln msg: Overlapping hits, possible frame ERROR between 109 and 106, Distance to subject end: 379 aas, your sequence is shorter than subject: 67 - 464

Fln protein: FCAHCSLLSFTILLTLKLVFQWHRSWWFIFLPLWxxxIIVARGRFSLPAPVPPHDRHWAPCHTVVDI

Protein Length: 68

Fln nts: TTTCTGTGCGCACTGCTCGCTTCTCTCTTTTACGATTTTGCTGACGCTCAAGCTCGTGTTCCAATGGCACCGCTCCTGGTGGTTTATATTTCTGCCTCTATGGxxxxxxxxxATCATTGTGGCTCGAGGACGATTCTCTTTGCCTGCTCCTGTACCACCTCATGATCGACATTGGGCACCTTGTCATACTGTTGTTGACATT

Fln Alignment:

biogeco3_mira_c13493___AHCXXXXXXXXXXXXXVFQWHRSWWFIFLPLWIxHIIVARGRFSLPAPVPPHDRHWAPCHTVVDI
A9NV42__________________AHCSLLSFTVLLTLKLGLQWHRSWWFIFLPLWIxHIIVARGRFSLPAPVPPHDRHWAPCHTVVAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain