SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17038

Length: 333 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene17038
CGTCATGGTCGTCTAACTTGTGCAGTTTGCTCCTATCCAATCATCGGTACCAAGATTCAAAGAGGTGAATTCTCATTTTAGCCTATGCTCAATTTGCTACAGTGAAGGGAAGGTACCTGTTGCATTCAAGCAAGAAGAATATAGGTTTAAAGAGTATGGCAGTGAAACTGAGGCGATTAAAGACAAATTCAAACTATTTTCTTTACACAGTGATTCCTCTCCAGATAATCCTTAGCGCTGCTTTTTTATCTGGCATAAAAATTGAGGGTGTTGTCAAATGCCAAGTATTCAGGCTATTCTTCTCCACCATTATGTAGAAATGGCACAGACATT

Ace file of the UniGene biog3_v1.0_unigene17038 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9070	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium-binding tetratricopeptide family protein [Arabidopsis thaliana] sp\|O23052.1\|Y1515_ARATH RecName: Full=Uncharacterized TPR repeat-containing protein At1g05150 gb\|AAB71463.1\| Contains similarity to Rattus O-GlcNAc transferase (gb\|U76557) [Arabidopsi	-	-	58%
FL-Next	sp=Uncharacterized TPR repeat-containing protein At1g05150; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	uncharacterized tpr repeat-containing protein at1g05150-like	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	79%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O23052

Fln msg: Overlapping hits, possible frame ERROR between 78 and 53, your sequence is shorter than subject: 79 - 808

Fln protein: RHGRLTCAVCSYPIIGTxxxxxxxxxxSLCSICYSEGKVPVAFKQEEYRFKEYGSETEAIKDKFKLFSLHSDSSPDNP*

Protein Length: 80

Fln nts: CGTCATGGTCGTCTAACTTGTGCAGTTTGCTCCTATCCAATCATCGGTACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCTATGCTCAATTTGCTACAGTGAAGGGAAGGTACCTGTTGCATTCAAGCAAGAAGAATATAGGTTTAAAGAGTATGGCAGTGAAACTGAGGCGATTAAAGACAAATTCAAACTATTTTCTTTACACAGTGATTCCTCTCCAGATAATCCTTAGCGCTGCTTTTTTATCTGGCATAAAAATTGAGGGTGTTGTCAAATGCCAAGTATTCAGGCTATTCTTCTCCACCATTATGTAGAAATGGCACAGACATT

Fln Alignment:

biogeco3_mira_c13434___RHGRLTCAVCSYPIIGTxxxxxxxxxSLCSICYSEGKVPVAFKQEEYRFKEYGSETEAIKDKFKLFSLHS
O23052__________________RHGNQVCSVCRYPVIGSxxxxxxxxxSLCNQCYGEGKVPPSFKQEEYKFREYESEAEAMKAKCVCFSMQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain