SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17018

Length: 255 nt

UniGene Fasta

>biog3_v1.0_unigene17018
AATGTGTTCGAATCCCTCTGAGAAGAAAACTAAGTCGTCAAATGTCGAGTAATTTATGATGCAGAACATGACTACAAAACTCGTAGGCACTGAAAGCAGTCCATCAGATGAGCAACAGAAACAGTCACTGCACCAGCAGCAGGTTCCGCCAACAGGCATATCACCTGCACATGCAGAATTTATGACACGACAAACTCAACTTGAGCTAGGACACACTGGAACTGATACTTTGTGGCAAGCTCGAACTGCATATCC

Ace file of the UniGene biog3_v1.0_unigene17018

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7835	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	unknown [Picea sitchensis]	-	-	9.14996e-39	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	9.14996e-39	86%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	9.14996e-39	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	9.14996e-39	86%
Blast2go	CCAAT-binding factor complex	GO:0016602	Cellular Component	9.14996e-39	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	0.0	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE55

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 66 - 288

Fln protein: MMQNMTTKLVGTESSPSDEQQKQSLHQQQVPPTGISPAHAEFMTRQTQLELGHTGTDTLWQARTAY

Protein Length: 67

Fln nts: AATGTGTTCGAATCCCTCTGAGAAGAAAACTAAGTCGTCAAATGTCGAGTAATTT_-_ATGATGCAGAACATGACTACAAAACTCGTAGGCACTGAAAGCAGTCCATCAGATGAGCAACAGAAACAGTCACTGCACCAGCAGCAGGTTCCGCCAACAGGCATATCACCTGCACATGCAGAATTTATGACACGACAAACTCAACTTGAGCTAGGACACACTGGAACTGATACTTTGTGGCAAGCTCGAACTGCATATCC

Fln Alignment:

biogeco3_mira_c13400___MMQNMTTKLVGTESSPSDEQQKQSLHQQQVPPTGISPAHAEFMTRQTQLELGHTGTDTLWQARTAY
D5AE55__________________MMQNVTTKL-GTESSPSDEQQKQPPQQQQVLPTGISPAHAEFMTRQTQLELGHSGGDTLWQARTAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain