SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene17013

Length: 237 nt

UniGene Fasta

>biog3_v1.0_unigene17013
ACCCAACGACTGTGATGGCATCCATGTTTCATCTTGTGGTCATGCCGTGCATCATGAATGCCTTGACCGCTATTTATCATCCCTGCGGCAGAGATATAACAACAGGATTATCTTTGAAGGGGTGCATATTGTTGATCCAGATCAGGGTGAATTTCTATGCCCTGTTTGCCGTCGTCTTGCAAATTCAGTTTTGCCGGTACTTCCTCGTGGGCCATCTGTGGACATGTATAGCACATT

Ace file of the UniGene biog3_v1.0_unigene17013

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16452	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Ubiquitin ligase E3 alpha, putative; Ricinus communis (Castor bean).	-	-	75%
Blast2go	protein	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T256

Fln msg: Distance to subject end: 575 aas, your sequence is shorter than subject: 78 - 2073

Fln protein: PNDCDGIHVSSCGHAVHHECLDRYLSSLRQRYNNRIIFEGVHIVDPDQGEFLCPVCRRLANSVLPVLPRGPSVDMYST

Protein Length: 79

Fln nts: ACCCAACGACTGTGATGGCATCCATGTTTCATCTTGTGGTCATGCCGTGCATCATGAATGCCTTGACCGCTATTTATCATCCCTGCGGCAGAGATATAACAACAGGATTATCTTTGAAGGGGTGCATATTGTTGATCCAGATCAGGGTGAATTTCTATGCCCTGTTTGCCGTCGTCTTGCAAATTCAGTTTTGCCGGTACTTCCTCGTGGGCCATCTGTGGACATGTATAGCACATT

Fln Alignment:

biogeco3_mira_c13394___PNDCDGIHVSSCGHAVHHECLDRYLSSLRQRYNNRIIFEGVHIVDPDQGEFLCPVCRRLANSVLPVLP
B9T256__________________PADCDGVYLSSCGHAVHQGCLDRYLSSLKERFVRRLVFEGGHIVDPDQGEFLCPVCRRLSNSILPSLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain